CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH25861	Soybean	plastid	93.33	92.0
GSMUA_Achr7P00180_001	Banana	cytosol	21.45	78.72
VIT_19s0177g00140.t01	Wine grape	plastid	79.42	77.62
Solyc07g064160.2.1	Tomato	plastid	78.84	76.84
KRG91236	Soybean	plastid	77.39	76.07
KRH35585	Soybean	plastid	76.52	75.21
TraesCS7B01G278200.1	Wheat	plastid	76.23	74.93
PGSC0003DMT400049574	Potato	plastid	77.39	74.79
TraesCS7D01G373100.2	Wheat	plastid, unclear	75.94	74.64
TraesCS7A01G376800.1	Wheat	plastid	75.94	74.64
Zm00001d011183_P001	Maize	plastid	75.07	73.16
EER99743	Sorghum	plastid	74.2	72.73
Os07t0529600-01	Rice	plastid	74.78	72.68
EES03134	Sorghum	plastid	74.49	72.6
Zm00001d044228_P001	Maize	plastid	74.49	72.39
KRH65723	Soybean	cytosol	42.03	64.16
TraesCS3B01G435500.1	Wheat	plastid	62.03	63.31
HORVU7Hr1G090100.3	Barley	cytosol	67.25	62.53
GSMUA_Achr2P14040_001	Banana	plastid	40.58	60.87
HORVU3Hr1G090190.1	Barley	plastid	61.45	59.55

Protein Annotations

Gene3D:3.50.50.60	EntrezGene:547461	MapMan:7.2.2.1	EMBL:AB030492	EMBL:ACUP02004031	InterPro:FAD/NAD-bd_sf
EnsemblPlantsGene:GLYMA_06G269700	GO:GO:0003674	GO:GO:0005488	GO:GO:0005506	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009228	GO:GO:0009507	GO:GO:0009536	GO:GO:0009570	GO:GO:0009987
GO:GO:0016020	GO:GO:0016021	GO:GO:0046872	GO:GO:0052837	InterPro:IPR036188	EnsemblPlants:KRH55656
ProteinID:KRH55656	ProteinID:KRH55656.1	HAMAP:MF_03158	PFAM:PF01946	PANTHER:PTHR43422	PANTHER:PTHR43422:SF3
UniProt:Q9SLR8	SUPFAM:SSF51905	InterPro:Sti35	TIGRFAMs:TIGR00292	InterPro:Thi4_fam	UniParc:UPI000009EEBA
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr6:+:45847862..45852264

Molecular Weight (calculated)

36516.1 Da

IEP (calculated)

6.096

GRAVY (calculated)

0.145

Length

345 amino acids

Sequence
(BLAST)

001: MASSTITSSF LTSPPSSLFN KSSSPSFHAT PTLRPLAPRA SMSASAPPYD FGSFRFDPIR ESIVSREMTR RYMIDMVTHA DTDVVIVGAG SAGLSCAYEL
101: SKNPSINIAI VEQSVSPGGG AWLGGQLFSA MVVRKPAHLF LDELNVEYDE QDNYVVIKHA ALFTSTIMSK LLARPNVKLF NAVAAEDLIV KNGRVGGVVT
201: NWALVSLNHD TQSCMDPNVM EAKVVVSSCG HDGPFGATGV KRLKSIGLID SVPGMKALDM NKAEDAIVRL TREVVPGMIV TGMEVAEIDG APRMGPTFGA
301: MMISGQKAAH LALRSLGLPN ALDSVGNVHP ELVLAAAESA EIAEA

Best Arabidopsis Sequence Match ( AT5G54770.1 )
(BLAST)

001: MAAIASTLSL SSTKPQRLFD SSFHGSAISA APISIGLKPR SFSVRATTAG YDLNAFTFDP IKESIVSREM TRRYMTDMIT YAETDVVVVG AGSAGLSAAY
101: EISKNPNVQV AIIEQSVSPG GGAWLGGQLF SAMIVRKPAH LFLDEIGVAY DEQDTYVVVK HAALFTSTIM SKLLARPNVK LFNAVAAEDL IVKGNRVGGV
201: VTNWALVAQN HHTQSCMDPN VMEAKIVVSS CGHDGPFGAT GVKRLKSIGM IDHVPGMKAL DMNTAEDAIV RLTREVVPGM IVTGMEVAEI DGAPRMGPTF
301: GAMMISGQKA GQLALKALGL PNAIDGTLVG NLSPELVLAA ADSAETVDA

Arabidopsis Description

THI1Thiamine thiazole synthase, chloroplastic [Source:UniProtKB/TrEMBL;Acc:A0A178UNL2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.