CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d044228_P001	Maize	plastid	90.96	90.7
EER99743	Sorghum	plastid	88.98	89.49
GSMUA_Achr7P00180_001	Banana	cytosol	22.88	86.17
CDY41008	Canola	peroxisome	66.95	84.64
TraesCS7D01G373100.2	Wheat	plastid, unclear	80.51	81.2
TraesCS7B01G278200.1	Wheat	plastid	80.51	81.2
TraesCS7A01G376800.1	Wheat	plastid	80.51	81.2
Os07t0529600-01	Rice	plastid	81.36	81.13
KRG91236	Soybean	plastid	77.12	77.78
KRH35585	Soybean	plastid	76.55	77.21
Solyc07g064160.2.1	Tomato	plastid	76.27	76.27
AT5G54770.1	Thale cress	plastid	74.58	75.64
CDY28754	Canola	plastid	74.58	75.64
Bra022742.1-P	Field mustard	plastid	74.29	75.36
PGSC0003DMT400049574	Potato	plastid	75.99	75.35
CDY43024	Canola	plastid	74.58	75.21
CDY52570	Canola	plastid	74.58	75.0
Bra029007.1-P	Field mustard	plastid	74.29	74.93
CDY47441	Canola	plastid	74.29	74.72
VIT_10s0116g00530.t01	Wine grape	plastid	74.86	74.65
KRH25861	Soybean	plastid	73.73	74.57
KRH55656	Soybean	plastid	72.6	74.49
Bra002957.1-P	Field mustard	plastid	74.01	74.43
VIT_19s0177g00140.t01	Wine grape	plastid	72.88	73.09
CDY42479	Canola	plastid	52.26	71.71
TraesCS3B01G435500.1	Wheat	plastid	65.82	68.93
GSMUA_Achr2P14040_001	Banana	plastid	44.07	67.83
HORVU7Hr1G090100.3	Barley	cytosol	66.95	63.88
KRH65723	Soybean	cytosol	40.68	63.72
HORVU3Hr1G090190.1	Barley	plastid	62.71	62.36

Protein Annotations

Gene3D:3.50.50.60	MapMan:7.2.2.1	EntrezGene:8078187	EnsemblPlants:EES03134	ProteinID:EES03134	ProteinID:EES03134.1
InterPro:FAD/NAD-bd_sf	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005506	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0006950	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009228	GO:GO:0009507	GO:GO:0009536	GO:GO:0009987
GO:GO:0016491	GO:GO:0046872	GO:GO:0052837	InterPro:IPR036188	HAMAP:MF_03158	PFAM:PF01946
PRINTS:PR00368	PANTHER:PTHR43422	PANTHER:PTHR43422:SF3	EnsemblPlantsGene:SORBI_3003G191000	SUPFAM:SSF51905	unigene:Sbi.20538
InterPro:Sti35	TIGRFAMs:TIGR00292	InterPro:Thi4_fam	UniParc:UPI0001A84D5E	RefSeq:XP_002458014.1	SEG:seg

Description

THI1-1hypothetical protein

Coordinates

chr3:-:51236002..51237593

Molecular Weight (calculated)

36840.5 Da

IEP (calculated)

5.971

GRAVY (calculated)

0.226

Length

354 amino acids

Sequence
(BLAST)

001: MATTAASSLL KSSFAGSRLP SATRAPSSVV VSTGGAPRTA AISASISSSN PPYDLTSFKF SPIKESIVSR EMTRRYMTDM ITHADTDVVI VGAGSAGLSC
101: AYELSKDPTV RVAIVEQSVS PGGGAWLGGQ LFSAMVVRKP AHLFLDELGV AYDEAADDYV VVKHAALFTS TVMSAVLARP NVKLFNAVAV EDLIVKGGRV
201: GGVVTNWALV SMNHDTQSCM DPNVMEAKVV VSSCGHDGPF GATGVKRLQD IGMIAAVPGM KALDMNAAED AIVRLTREVV PGMIVTGMEV AEIDGAPRMG
301: PTFGAMMISG QKAAHLALKA LGRPNAVDGT IPKVSPALRE EFVIASKDDE VVDA

Best Arabidopsis Sequence Match ( AT5G54770.1 )
(BLAST)

001: MAAIASTLSL SSTKPQRLFD SSFHGSAISA APISIGLKPR SFSVRATTAG YDLNAFTFDP IKESIVSREM TRRYMTDMIT YAETDVVVVG AGSAGLSAAY
101: EISKNPNVQV AIIEQSVSPG GGAWLGGQLF SAMIVRKPAH LFLDEIGVAY DEQDTYVVVK HAALFTSTIM SKLLARPNVK LFNAVAAEDL IVKGNRVGGV
201: VTNWALVAQN HHTQSCMDPN VMEAKIVVSS CGHDGPFGAT GVKRLKSIGM IDHVPGMKAL DMNTAEDAIV RLTREVVPGM IVTGMEVAEI DGAPRMGPTF
301: GAMMISGQKA GQLALKALGL PNAIDGTLVG NLSPELVLAA ADSAETVDA

Arabidopsis Description

THI1Thiamine thiazole synthase, chloroplastic [Source:UniProtKB/TrEMBL;Acc:A0A178UNL2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.