Factsheet for PGSC0003DMT400049574

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400040141
PGSC0003DMT400040142
PGSC0003DMT400040143
PGSC0003DMT400040144
PGSC0003DMT400040206
PGSC0003DMT400040207
PGSC0003DMT400077934

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G54770.1	PGSC0003DMT400040141	AT3G46090.1	17259181
AT5G54770.1	PGSC0003DMT400040142	AT3G46090.1	17259181
AT5G54770.1	PGSC0003DMT400040143	AT3G46090.1	17259181
AT5G54770.1	PGSC0003DMT400040144	AT3G46090.1	17259181
AT5G54770.1	PGSC0003DMT400040206	AT3G46090.1	17259181
AT5G54770.1	PGSC0003DMT400040207	AT3G46090.1	17259181
AT5G54770.1	PGSC0003DMT400077934	AT3G46090.1	17259181

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g064160.2.1	Tomato	plastid	94.4	95.2
CDY41008	Canola	peroxisome	67.79	86.43
GSMUA_Achr7P00180_001	Banana	cytosol	21.85	82.98
VIT_19s0177g00140.t01	Wine grape	plastid	79.27	80.17
KRH25861	Soybean	plastid	76.47	78.0
KRH55656	Soybean	plastid	74.79	77.39
AT5G54770.1	Thale cress	plastid	74.51	76.22
CDY28754	Canola	plastid	74.51	76.22
EES03134	Sorghum	plastid	75.35	75.99
Bra022742.1-P	Field mustard	plastid	74.23	75.93
CDY52570	Canola	plastid	74.79	75.85
Bra029007.1-P	Field mustard	plastid	74.51	75.78
CDY43024	Canola	plastid	74.51	75.78
Bra002957.1-P	Field mustard	plastid	74.51	75.57
CDY47441	Canola	plastid	74.51	75.57
EER99743	Sorghum	plastid	73.95	75.0
Zm00001d011183_P001	Maize	plastid	74.23	74.86
TraesCS7A01G376800.1	Wheat	plastid	73.39	74.64
TraesCS7B01G278200.1	Wheat	plastid	73.39	74.64
TraesCS7D01G373100.2	Wheat	plastid, unclear	73.39	74.64
Zm00001d044228_P001	Maize	plastid	73.67	74.08
Os07t0529600-01	Rice	plastid	73.11	73.52
CDY42479	Canola	plastid	52.1	72.09
GSMUA_Achr2P14040_001	Banana	plastid	42.58	66.09
TraesCS3B01G435500.1	Wheat	plastid	59.94	63.31
HORVU7Hr1G090100.3	Barley	cytosol	64.71	62.26
HORVU3Hr1G090190.1	Barley	plastid	58.82	58.99

Protein Annotations

EntrezGene:102598996	Gene3D:3.50.50.60	MapMan:7.2.2.1	InterPro:FAD/NAD-bd_sf	GO:GO:0003674	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0006950
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009228	GO:GO:0009507	GO:GO:0009536
GO:GO:0009570	GO:GO:0009987	GO:GO:0046872	GO:GO:0052837	InterPro:IPR036188	UniProt:M1BNZ3
HAMAP:MF_03158	PFAM:PF01946	EnsemblPlantsGene:PGSC0003DMG400019257	PGSC:PGSC0003DMG400019257	EnsemblPlants:PGSC0003DMT400049574	PRINTS:PR00419
PANTHER:PTHR43422	PANTHER:PTHR43422:SF3	SUPFAM:SSF51905	InterPro:Sti35	TIGRFAMs:TIGR00292	InterPro:Thi4_fam
UniParc:UPI00029690EA	RefSeq:XP_006360084.1	SEG:seg	:	:	:

Description

Chloroplast thiazole biosynthetic protein [Source:PGSC_GENE;Acc:PGSC0003DMG400019257]

Coordinates

chr7:+:54327915..54330135

Molecular Weight (calculated)

37801.8 Da

IEP (calculated)

5.370

GRAVY (calculated)

0.126

Length

357 amino acids

Sequence
(BLAST)

001: MASTLASSVI SKTNFIDTHK SSFYGVPISS QARLKIVKST PQNMAVSMSA DASPPPPPYD LGSFSFNPIK ESIVAREMTR RYMTDMITYA DTDVVIVGAG
101: SAGLSCAYEL SKNPDVQVAI LEQSVSPGGG AWLGGQLFSA MVVRKPAHLF LNELGIDYDE QDHYVVIKHA ALFTSTIMSK LLARPNVKLF NAVATEDLIV
201: KNGRVGGVVT NWSLVSQNHD TQSCMDPNVM EAKVVVSSCG HDGPMGATGV KRLRSIGMIN SVPGMKALDM NAAEDAIVRL TREVVPGMIV TGMEVAEIDG
301: APRMGPTFGA MMISGQKAAH LALRALGLPN ALDGTAETSI LPELMLAAAD EAEIADA

Best Arabidopsis Sequence Match ( AT5G54770.1 )
(BLAST)

001: MAAIASTLSL SSTKPQRLFD SSFHGSAISA APISIGLKPR SFSVRATTAG YDLNAFTFDP IKESIVSREM TRRYMTDMIT YAETDVVVVG AGSAGLSAAY
101: EISKNPNVQV AIIEQSVSPG GGAWLGGQLF SAMIVRKPAH LFLDEIGVAY DEQDTYVVVK HAALFTSTIM SKLLARPNVK LFNAVAAEDL IVKGNRVGGV
201: VTNWALVAQN HHTQSCMDPN VMEAKIVVSS CGHDGPFGAT GVKRLKSIGM IDHVPGMKAL DMNTAEDAIV RLTREVVPGM IVTGMEVAEI DGAPRMGPTF
301: GAMMISGQKA GQLALKALGL PNAIDGTLVG NLSPELVLAA ADSAETVDA

Arabidopsis Description

THI1Thiamine thiazole synthase, chloroplastic [Source:UniProtKB/TrEMBL;Acc:A0A178UNL2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.