Factsheet for Solyc02g086880.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

mitochondrion 10

Predictors

GFP

MS/MS

Papers

plastid: 20363867
plastid: 22908117
nucleus: 25464976
plastid: 26371478
nucleus: 28394025
extracellular: 29876421

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

msms PMID: 26371478 doi

M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi

Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc06g075780.1.1
Solyc11g073060.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G14780.1	Solyc06g075780.1.1	AT3G46090.1	17259181
AT5G14780.1	Solyc11g073060.1.1	AT3G46090.1	17259181

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400001303	Potato	mitochondrion	98.95	98.95
VIT_14s0066g01320.t01	Wine grape	mitochondrion	88.19	87.73
Zm00001d011367_P001	Maize	cytosol	64.04	84.43
Zm00001d011368_P001	Maize	cytosol	64.04	84.43
Zm00001d006877_P001	Maize	cytosol, mitochondrion, plastid	62.2	84.04
CDX69558	Canola	mitochondrion	83.2	82.55
Bra008737.1-P	Field mustard	mitochondrion	82.94	82.29
CDY09885	Canola	mitochondrion	82.68	82.25
AT5G14780.1	Thale cress	mitochondrion	82.68	82.03
TraesCS7A01G232200.1	Wheat	golgi	80.58	81.43
TraesCS7B01G130600.1	Wheat	mitochondrion	80.58	81.43
TraesCS7D01G232300.1	Wheat	mitochondrion	80.58	81.43
EER89775	Sorghum	mitochondrion	80.31	81.38
GSMUA_Achr3P01200_001	Banana	mitochondrion	81.63	81.2
HORVU7Hr1G047700.3	Barley	mitochondrion, plasma membrane	80.31	81.17
Zm00001d045965_P001	Maize	mitochondrion	80.05	81.12
CDX85582	Canola	mitochondrion	81.36	80.94
Os06t0486800-01	Rice	mitochondrion	79.79	80.85
KRG93315	Soybean	mitochondrion	79.53	80.8
Bra023487.1-P	Field mustard	mitochondrion	81.1	80.47
CDX91020	Canola	mitochondrion	80.31	79.69
Zm00001d053924_P001	Maize	cytosol	49.34	79.66
Os06t0486900-01	Rice	mitochondrion	78.74	79.37
TraesCS6D01G255200.2	Wheat	mitochondrion	77.43	78.25
TraesCS6B01G302400.2	Wheat	mitochondrion	77.17	77.98
KRG93317	Soybean	nucleus	79.53	77.89
EES07384	Sorghum	mitochondrion	78.22	77.6
TraesCS4D01G007200.1	Wheat	golgi	76.38	77.6
KRH20294	Soybean	cytosol, endoplasmic reticulum, mitochondrion, nucleus	78.74	77.32
TraesCS4B01G066400.1	Wheat	mitochondrion	71.65	76.9
Zm00001d014163_P001	Maize	mitochondrion	48.03	75.62
TraesCS5D01G389600.1	Wheat	extracellular, mitochondrion	63.52	65.94
Zm00001d017801_P001	Maize	mitochondrion	28.87	63.95
TraesCS6A01G274900.1	Wheat	mitochondrion	61.68	62.33
Zm00001d004323_P001	Maize	mitochondrion	23.62	62.07
Zm00001d019818_P001	Maize	mitochondrion	23.1	60.69
Zm00001d033618_P001	Maize	cytosol	61.15	60.52
Solyc11g020060.1.1	Tomato	cytosol	20.21	27.4
Solyc03g044670.1.1	Tomato	cytosol	16.27	25.83
Solyc01g093990.2.1	Tomato	cytosol	21.26	25.08
Solyc12g044250.1.1	Tomato	vacuole	19.42	23.49
Solyc03g120680.2.1	Tomato	nucleus	18.37	22.51
Solyc08g080030.2.1	Tomato	cytosol	15.49	21.85
Solyc03g120670.2.1	Tomato	cytosol, nucleus, plastid	17.59	21.41
Solyc12g044260.1.1	Tomato	cytosol	17.06	20.77
Solyc01g111630.2.1	Tomato	nucleus, plastid	18.9	18.65
Solyc03g120660.2.1	Tomato	cytosol	7.61	18.35
Solyc03g112070.2.1	Tomato	plastid	23.1	14.67
Solyc10g049890.1.1	Tomato	plastid	21.52	13.78
Solyc03g123830.2.1	Tomato	plastid	19.95	12.12

Protein Annotations

KEGG:00630+1.17.1.9	KEGG:00680+1.17.1.9	Gene3D:3.40.50.720	MapMan:50.1.16	EMBL:AJ849378	InterPro:D-isomer_2_OHA_DH_cat_dom
InterPro:D-isomer_DH_CS	InterPro:D-isomer_DH_CS1	InterPro:D-isomer_DH_NAD-bd	InterPro:FDH_NAD-dep	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005739	GO:GO:0008150	GO:GO:0008152	GO:GO:0008863	GO:GO:0009056	GO:GO:0009987
GO:GO:0016491	GO:GO:0016616	GO:GO:0042183	GO:GO:0051287	GO:GO:0055114	HAMAP:MF_03210
InterPro:NAD(P)-bd_dom_sf	PFAM:PF00389	PFAM:PF02826	ScanProsite:PS00065	ScanProsite:PS00670	ScanProsite:PS00671
PANTHER:PTHR42938	PANTHER:PTHR42938:SF1	UniProt:Q5NE18	SUPFAM:SSF51735	SUPFAM:SSF52283	EnsemblPlantsGene:Solyc02g086880.2
EnsemblPlants:Solyc02g086880.2.1	UniParc:UPI000049ADC0	SEG:seg	:	:	:

Description

Formate dehydrogenase, mitochondrial [Source:UniProtKB/TrEMBL;Acc:Q5NE18]

Coordinates

chr2:+:49485238..49489754

Molecular Weight (calculated)

42095.7 Da

IEP (calculated)

7.373

GRAVY (calculated)

-0.249

Length

381 amino acids

Sequence
(BLAST)

001: MAMRRVASTA ARAIASPSSL VFTRELQASP GPKKIVGVFY KANEYAEMNP NFLGCAENAL GIREWLESKG HQYIVTPDKE GPDCELEKHI PDLHVLISTP
101: FHPAYVTAER IKKAKNLQLL LTAGIGSDHV DLKAAAAAGL TVAEVTGSNT VSVAEDELMR ILILVRNFLP GHHQVINGEW NVAAIAHRAY DLEGKTVGTV
201: GAGRIGRLLL QRLKPFNCNL LYHDRLKMDS ELENQIGAKF EEDLDKMLSK CDIVVINTPL TEKTKGMFDK ERIAKLKKGV LIVNNARGAI MDTQAVVDAC
301: NSGHIAGYSG DVWYPQPAPK DHLWRYMPNQ AMTPHISGTT IDAQLRYAAG TKDMLDRYFK GEDFPAENYI VKDGELAPQY R

Best Arabidopsis Sequence Match ( AT5G14780.1 )
(BLAST)

001: MAMRQAAKAT IRACSSSSSS GYFARRQFNA SSGDSKKIVG VFYKANEYAT KNPNFLGCVE NALGIRDWLE SQGHQYIVTD DKEGPDCELE KHIPDLHVLI
101: STPFHPAYVT AERIKKAKNL KLLLTAGIGS DHIDLQAAAA AGLTVAEVTG SNVVSVAEDE LMRILILMRN FVPGYNQVVK GEWNVAGIAY RAYDLEGKTI
201: GTVGAGRIGK LLLQRLKPFG CNLLYHDRLQ MAPELEKETG AKFVEDLNEM LPKCDVIVIN MPLTEKTRGM FNKELIGKLK KGVLIVNNAR GAIMERQAVV
301: DAVESGHIGG YSGDVWDPQP APKDHPWRYM PNQAMTPHTS GTTIDAQLRY AAGTKDMLER YFKGEDFPTE NYIVKDGELA PQYR

Arabidopsis Description

FDH1Formate dehydrogenase, mitochondrial [Source:UniProtKB/TrEMBL;Acc:A0A178UHK7]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.