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Rice
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Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: mitochondrion

Predictor Summary:
  • mitochondrion 10
Predictors GFP MS/MS Papers
Winner Takes All:mitochondrion
Any Predictor:mitochondrion
BaCelLo:mitochondrion
EpiLoc:mitochondrion
iPSORT:mitochondrion
MultiLoc:mitochondrion
Plant-mPloc:mitochondrion
Predotar:mitochondrion
PProwler:mitochondrion
TargetP:mitochondrion
WoLF PSORT:mitochondrion
YLoc:mitochondrion
 mitochondrion: 15069638
mitochondrion: 15276442
mitochondrion: 19010998
mitochondrion: 23027867
plasma membrane: 27800704
plastid: 27992503
msms PMID: 15276442 doi
BK Kristensen, P Askerlund, NV Bykova, H Egsgaard, IM Møller
Risø National Laboratory, Plant Research Department, P.O. Box 49, DK-4000 Roskilde, Denmark.
msms PMID: 23027867 doi
G Liu, H Tian, YQ Huang, J Hu, YX Ji, SQ Li, YQ Feng, L Guo, YG Zhu
State Key Laboratory of Hybrid Rice, College of Life Sciences, Wuhan University, Wuhan 430072, China.
msms PMID: 27800704 doi
J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu
Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
msms PMID: 15069638 doi
N Tanaka, M Fujita, H Handa, S Murayama, M Uemura, Y Kawamura, T Mitsui, S Mikami, Y Tozawa, T Yoshinaga, S Komatsu
Department of Molecular Genetics, National Institute of Agrobiological Sciences, 305-8602, Tsukuba, Japan.
msms PMID: 19010998 doi
S Huang, NL Taylor, R Narsai, H Eubel, J Whelan, AH Millar
Australian Research Council Centre of Excellence in Plant Energy Biology, M316, University of Western Australia, Crawley, 6009 Western Australia, Australia.
msms PMID: 27992503 doi
S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng
Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Zm00001d011368_P001 Maize cytosol 72.87 94.81
Zm00001d011367_P001 Maize cytosol 72.87 94.81
Zm00001d045965_P001 Maize mitochondrion 93.88 93.88
EER89775 Sorghum mitochondrion 93.88 93.88
TraesCS7A01G232200.1 Wheat golgi 93.88 93.63
TraesCS7B01G130600.1 Wheat mitochondrion 93.88 93.63
TraesCS7D01G232300.1 Wheat mitochondrion 93.88 93.63
HORVU7Hr1G047700.3 Barley mitochondrion, plasma membrane 93.88 93.63
Zm00001d006877_P001 Maize cytosol, mitochondrion, plastid 70.21 93.62
Os06t0486900-01 Rice mitochondrion 90.69 90.21
Zm00001d053924_P001 Maize cytosol 54.79 87.29
TraesCS4D01G007200.1 Wheat golgi 86.44 86.67
TraesCS4B01G066400.1 Wheat mitochondrion 80.05 84.79
Zm00001d014163_P001 Maize mitochondrion 54.26 84.3
VIT_14s0066g01320.t01 Wine grape mitochondrion 84.84 83.29
KRG93315 Soybean mitochondrion 82.18 82.4
GSMUA_Achr3P01200_001 Banana mitochondrion 83.78 82.25
KRH20294 Soybean cytosol, endoplasmic reticulum, mitochondrion, nucleus 83.24 80.67
KRG93317 Soybean nucleus 83.24 80.46
Solyc02g086880.2.1 Tomato plastid 80.85 79.79
PGSC0003DMT400001303 Potato mitochondrion 80.85 79.79
CDY09885 Canola mitochondrion 81.12 79.63
Bra008737.1-P Field mustard mitochondrion 81.12 79.43
CDX69558 Canola mitochondrion 80.85 79.17
Bra023487.1-P Field mustard mitochondrion 80.05 78.39
CDX85582 Canola mitochondrion 79.79 78.33
AT5G14780.1 Thale cress mitochondrion 79.79 78.12
CDX91020 Canola mitochondrion 78.72 77.08
Zm00001d004323_P001 Maize mitochondrion 27.39 71.03
Zm00001d019818_P001 Maize mitochondrion 26.6 68.97
Zm00001d017801_P001 Maize mitochondrion 31.38 68.6
Zm00001d033618_P001 Maize cytosol 67.55 65.97
Os07t0263400-00 Rice cytosol 18.62 24.65
Os04t0107200-01 Rice mitochondrion 21.28 24.32
Os04t0107500-01 Rice plasma membrane 20.21 24.05
Os01t0228600-01 Rice extracellular 20.21 24.05
Os04t0106400-01 Rice cytosol, mitochondrion, plastid 21.01 24.01
Os04t0107300-01 Rice mitochondrion, plasma membrane 19.95 23.01
Os07t0264100-01 Rice mitochondrion 21.81 21.93
Os11t0229100-01 Rice extracellular 7.98 21.58
Os02t0101500-02 Rice extracellular, mitochondrion 20.48 19.95
Os04t0650800-01 Rice plastid 23.4 14.36
Os08t0447000-01 Rice plastid 22.87 13.85
Os06t0655100-00 Rice plastid 21.54 12.8
Protein Annotations
KEGG:00630+1.17.1.9KEGG:00680+1.17.1.9Gene3D:3.40.50.720EntrezGene:4341069MapMan:50.1.16EMBL:AB019533
EMBL:AK065872ProteinID:BAD37348.1ProteinID:BAD38299.1ProteinID:BAF19580.1ProteinID:BAS97836.1InterPro:D-isomer_2_OHA_DH_cat_dom
InterPro:D-isomer_DH_CSInterPro:D-isomer_DH_CS1InterPro:D-isomer_DH_NAD-bdInterPro:FDH_NAD-depGO:GO:0000166GO:GO:0003674
GO:GO:0003824GO:GO:0005488GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005737
GO:GO:0005739GO:GO:0008150GO:GO:0008152GO:GO:0008863GO:GO:0009056GO:GO:0009987
GO:GO:0016491GO:GO:0016616GO:GO:0042183GO:GO:0051287GO:GO:0055114EMBL:JN944369
HAMAP:MF_03210InterPro:NAD(P)-bd_dom_sfEnsemblPlantsGene:Os06g0486800EnsemblPlants:Os06t0486800-01PFAM:PF00389PFAM:PF02826
ScanProsite:PS00065ScanProsite:PS00670ScanProsite:PS00671PANTHER:PTHR42938PANTHER:PTHR42938:SF1UniProt:Q0DC43
UniProt:Q9SXP2SUPFAM:SSF51735SUPFAM:SSF52283UniParc:UPI0000426267RefSeq:XP_015643973.1SEG:seg
Description
FORMATE DEHYDROGENASESimilar to Formate dehydrogenase, mitochondrial precursor (EC 1.2.1.2) (NAD- dependent formate dehydrogenase) (FDH). (Os06t0486800-01)
Coordinates
chr6:+:16649553..16653244
Molecular Weight (calculated)
41343.8 Da
IEP (calculated)
7.187
GRAVY (calculated)
-0.226
Length
376 amino acids
Sequence
(BLAST)
001: MAMWRAAAGH LLGRALGSRA AHTSAGSKKI VGVFYKGGEY ADKNPNFVGC VEGALGIREW LESKGHHYIV TDDKEGLNSE LEKHIEDMHV LITTPFHPAY
101: VSAERIKKAK NLELLLTAGI GSDHIDLPAA AAAGLTVAEV TGSNTVSVAE DELMRILILL RNFLPGYQQV VHGEWNVAGI AYRAYDLEGK TVGTVGAGRI
201: GRLLLQRLKP FNCNLLYHDR LKIDPELEKE IGAKYEEDLD AMLPKCDVIV INTPLTEKTR GMFNKERIAK MKKGVIIVNN ARGAIMDTQA VADACSSGQV
301: AGYGGDVWFP QPAPKDHPWR YMPNHAMTPH ISGTTIDAQL RYAAGVKDML DRYFKGEDFP VQNYIVKEGQ LASQYQ
Best Arabidopsis Sequence Match ( AT5G14780.1 )
(BLAST)
001: MAMRQAAKAT IRACSSSSSS GYFARRQFNA SSGDSKKIVG VFYKANEYAT KNPNFLGCVE NALGIRDWLE SQGHQYIVTD DKEGPDCELE KHIPDLHVLI
101: STPFHPAYVT AERIKKAKNL KLLLTAGIGS DHIDLQAAAA AGLTVAEVTG SNVVSVAEDE LMRILILMRN FVPGYNQVVK GEWNVAGIAY RAYDLEGKTI
201: GTVGAGRIGK LLLQRLKPFG CNLLYHDRLQ MAPELEKETG AKFVEDLNEM LPKCDVIVIN MPLTEKTRGM FNKELIGKLK KGVLIVNNAR GAIMERQAVV
301: DAVESGHIGG YSGDVWDPQP APKDHPWRYM PNQAMTPHTS GTTIDAQLRY AAGTKDMLER YFKGEDFPTE NYIVKDGELA PQYR
Arabidopsis Description
FDH1Formate dehydrogenase, mitochondrial [Source:UniProtKB/TrEMBL;Acc:A0A178UHK7]
SUBAcon: [mitochondrion]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.