Factsheet for Os06t0655100-00

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
mitochondrion 4
cytosol 1

Predictors

GFP

MS/MS

Papers

plastid: 17189339

msms PMID: 17189339 doi

T Kleffmann, A von Zychlinski, D Russenberger, M Hirsch-Hoffmann, P Gehrig, W Gruissem, S Baginsky

Institute of Plant Sciences, Eidgenössische Technische Hochschule Zurich, 8092 Zurich, Switzerland.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU7Hr1G111190.2	Barley	mitochondrion	74.09	88.83
TraesCS7B01G400800.1	Wheat	plastid	79.15	82.0
TraesCS7D01G483800.1	Wheat	plastid	78.99	81.97
TraesCS7A01G496500.1	Wheat	plastid	78.83	81.54
Zm00001d046923_P001	Maize	plastid	75.51	81.15
EER90146	Sorghum	mitochondrion, plastid	78.36	80.91
Os04t0650800-01	Rice	plastid	68.56	70.8
Os08t0447000-01	Rice	plastid	67.14	68.44
KRH23702	Soybean	extracellular	58.61	63.31
Os01t0228600-01	Rice	extracellular	14.06	28.16
Os04t0107500-01	Rice	plasma membrane	13.59	27.22
Os04t0107300-01	Rice	mitochondrion, plasma membrane	13.59	26.38
Os04t0107200-01	Rice	mitochondrion	13.59	26.14
Os04t0106400-01	Rice	cytosol, mitochondrion, plastid	13.43	25.84
Os07t0263400-00	Rice	cytosol	11.53	25.7
Os07t0264100-01	Rice	mitochondrion	14.69	24.87
Os02t0101500-02	Rice	extracellular, mitochondrion	14.85	24.35
Os11t0229100-01	Rice	extracellular	5.21	23.74
Os06t0486900-01	Rice	mitochondrion	12.95	21.69
Os06t0486800-01	Rice	mitochondrion	12.8	21.54

Protein Annotations

KEGG:00260+1.1.1.95	KEGG:00680+1.1.1.95	Gene3D:3.30.1330.90	Gene3D:3.30.70.260	Gene3D:3.40.50.720	MapMan:4.1.4.1.1
UniProt:A0A0P0WZL3	InterPro:ACT_dom	InterPro:ASB_dom_sf	ProteinID:BAS98933.1	InterPro:D-isomer_2_OHA_DH_cat_dom	InterPro:D-isomer_DH_CS
InterPro:D-isomer_DH_CS1	InterPro:D-isomer_DH_NAD-bd	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004617
GO:GO:0005488	GO:GO:0006564	GO:GO:0008150	GO:GO:0008152	GO:GO:0008652	GO:GO:0009058
GO:GO:0009987	GO:GO:0016491	GO:GO:0016616	GO:GO:0051287	GO:GO:0055114	InterPro:IPR002912
InterPro:IPR029009	InterPro:NAD(P)-bd_dom_sf	EnsemblPlantsGene:Os06g0655100	EnsemblPlants:Os06t0655100-00	PFAM:PF00389	PFAM:PF01842
PFAM:PF02826	InterPro:PGDH	ScanProsite:PS00065	ScanProsite:PS00670	ScanProsite:PS00671	PFscan:PS51671
PANTHER:PTHR42938	PANTHER:PTHR42938:SF4	SUPFAM:SSF143548	SUPFAM:SSF51735	SUPFAM:SSF52283	SUPFAM:SSF55021
TIGRFAMs:TIGR01327	UniParc:UPI0003939054	SEG:seg	:	:	:

Description

Similar to D-3-phosphoglycerate dehydrogenase. (Os06t0655100-00)

Coordinates

chr6:-:26855082..26858660

Molecular Weight (calculated)

67943.0 Da

IEP (calculated)

8.984

GRAVY (calculated)

-0.079

Length

633 amino acids

Sequence
(BLAST)

001: MRLYQIHRRP QTRRHLPRNG VRIPIYNQTP NPDITRSPWR WRRRSATYSP HRRRPRPPQP TRLTTTREPW PHTAAPPRSA AAAASSSPAG SPLLRPPPKL
101: GDAGLELLRR FANVDCAYEL TAEELRAKVS LVDALVVRSA TRVTREVFEA ARGRLRVVGR AGVGIDNVDL QAATEAGCLV VNAPTANTVA AAEHAIALLA
201: AMARNVAQAD ASLKAGKWQR NKYVGVSLVG KTLAIMGFGK VGSEVARRAK GLGMDIISHD PYAPVDRARA IGVDLVSFDE AISTADFISL HMPLTPSTAK
301: LFDDETFANM KKGVRIINVA RGGVVDEDAL LRALDNGTVS QAALDVFTEE PPPKDSKLVH HEHVTVTPHL GASTSEAQEG VALEIAEAVL GALKGELAAT
401: AVNAPMVPAE VLSELSPYVI LAEKLGRLVV QLVAGGSGIK GVKIGYSSSR DPDDLDTRVL RAMVTKGIIE PISSAFVNIV NADYVAKQRG LRISEERILL
501: DGSPEIPIDS IQVHLANVES KFAGALSDEG DIRVEGEVKD GKPHLTLVGP FSVDVSLEGN LILCRQVDQP GIIGKVGSIL GKMNVNVNFM SVGRTAPGKQ
601: AIMAIGVDEE PEKEALKLIG DIPSVEEFVF IKL

Best Arabidopsis Sequence Match ( AT4G34200.1 )
(BLAST)

001: MSATAAASSS IAVATNSLRN VTLSSRSPLP SAISVAFPSR GRNTLQRRLV LVSCSTGDGS KPTILVAEKL GDAGIKLLED VANVDCSYNM TPEELNIKIS
101: LCDALIVRSG TKVGREVFES SHGRLKVVGR AGVGIDNVDL SAATEFGCLV VNAPTANTIA AAEHGIALMA AMARNVAQAD ASVKAGEWKR NKYVGVSLVG
201: KTLAVLGFGK VGTEVARRAK GLGMRVIAHD PYAPADRAHA IGVDLVSFDE ALATADFISL HMPLTPTTSK ILNDETFAKM KKGVRIVNVA RGGVIDEDAL
301: VRALDAGIVA QAALDVFTKE PPAKDSKLVQ HERVTVTPHL GASTMEAQEG VAIEIAEAVV GALNGELAAT AVNAPMVSAE VLTELKPYVV LAEKLGRLAV
401: QLVAGGSGVK NAKITYASAR ATDDLDTRLL RAMITKGIIE PISDVYVNLV NADFTAKQRG LRLSEERVLL DGSPESPLET ITVQLSNVES KFASSLSESG
501: EVKVEGKVKD GVPHLTKVGS FEVDVTLEGS IILCRQVDQP GMIGTVGSIL GESNVNVNFM SVGRIAPRKQ AIMAIGVDDI PSKETLKKIG EIPAVEEFVF
601: LKL

Arabidopsis Description

PGDH1D-3-phosphoglycerate dehydrogenase [Source:UniProtKB/TrEMBL;Acc:A0A178UWV4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.