Factsheet for TraesCS7B01G400800.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
mitochondrion 2
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	peroxisome, plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	plastid
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7D01G483800.1	Wheat	plastid	97.05	97.21
TraesCS7A01G496500.1	Wheat	plastid	96.24	96.08
HORVU7Hr1G111190.2	Barley	mitochondrion	82.49	95.45
EER90146	Sorghum	mitochondrion, plastid	83.47	83.2
Zm00001d046923_P001	Maize	plastid	80.2	83.19
Os06t0655100-00	Rice	plastid	82.0	79.15
TraesCS1B01G234300.2	Wheat	plastid	71.03	70.11
KRH23702	Soybean	extracellular	61.7	64.33
TraesCS2B01G048000.1	Wheat	mitochondrion	16.53	31.17
TraesCS2B01G047900.1	Wheat	cytosol, peroxisome, plastid	15.88	30.7
TraesCS2B01G048100.1	Wheat	plastid	16.69	29.65
TraesCS3B01G180100.1	Wheat	cytosol, golgi, unclear	15.22	29.43
TraesCS4B01G324200.1	Wheat	peroxisome	15.22	29.43
TraesCS1B01G004500.1	Wheat	extracellular, golgi, mitochondrion	15.55	29.41
TraesCS5B01G226200.1	Wheat	cytosol	6.38	28.89
TraesCS7B01G456600.1	Wheat	cytosol, plastid	16.2	28.78
TraesCS2B01G048500.1	Wheat	cytosol	14.57	26.41
TraesCS6B01G004400.1	Wheat	peroxisome	15.55	24.61
TraesCS5B01G158700.2	Wheat	mitochondrion, plastid	14.73	23.81
TraesCS6B01G302400.2	Wheat	mitochondrion	14.08	22.81
TraesCS7B01G130600.1	Wheat	mitochondrion	14.08	22.81
TraesCS7B01G373500.1	Wheat	cytosol	3.76	22.12
TraesCS4B01G066400.1	Wheat	mitochondrion	12.77	21.97

Protein Annotations

KEGG:00260+1.1.1.95	KEGG:00680+1.1.1.95	Gene3D:3.30.1330.90	Gene3D:3.30.70.260	Gene3D:3.40.50.720	MapMan:4.1.4.1.1
InterPro:ACT_dom	InterPro:ASB_dom_sf	InterPro:D-isomer_2_OHA_DH_cat_dom	InterPro:D-isomer_DH_CS	InterPro:D-isomer_DH_CS1	InterPro:D-isomer_DH_NAD-bd
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004617	GO:GO:0005488	GO:GO:0006564
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016616	GO:GO:0051287
GO:GO:0055114	InterPro:IPR002912	InterPro:IPR029009	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00389	PFAM:PF01842
PFAM:PF02826	InterPro:PGDH	ScanProsite:PS00065	ScanProsite:PS00670	PFscan:PS51671	PANTHER:PTHR42938
PANTHER:PTHR42938:SF4	SUPFAM:SSF143548	SUPFAM:SSF51735	SUPFAM:SSF52283	SUPFAM:SSF55021	TIGRFAMs:TIGR01327
EnsemblPlantsGene:TraesCS7B01G400800	EnsemblPlants:TraesCS7B01G400800.1	TIGR:cd04902	TIGR:cd12173	SEG:seg	:

Description

No Description!

Coordinates

chr7B:+:667307244..667310321

Molecular Weight (calculated)

64086.8 Da

IEP (calculated)

6.373

GRAVY (calculated)

0.201

Length

611 amino acids

Sequence
(BLAST)

001: MALATPLRHL LAAAPDPATG APPSLQAQPA RAFPPHRRLL LRSIRLVAAP SSDATRHAGV AARAAGGGRP TVLVTEKLGA AGLELLRAFA NVDCAYELTA
101: EELRAKVSLV DALVVRSATR VTREVFEAAR GRLRVVGRAG VGIDNVDLQA ATEAGCLVVN APTANTVAAA EHAVALLAAM ARNVAQADAS LKAGKWQRSK
201: YVGVSLVGKT IAIMGFGKVG SEVARRAKGL GMDVIAHDPY APVDRARAIG VDLVSFDDAI STADFISLHM PLTPSTTKIF NDETFAKMTK GVRLINVARG
301: GVVDEEALLR ALDNGTVAQA ALDVFFEEPP PKDSKLVHHE NVTVTPHLGA STTEAQEGVA LEIAEAVIGA LKGELAATAV NAPMVSAEVL AELSPYVILA
401: EKLGRLAVQL VAGGSGIKAV KIVYSSARDP DDLDTRILRA MVTKGIVEPI SSAFVNMVNA DYVAKQRGLR IIEEQILLDG SPEVPINSIQ VQLANVESKF
501: AGALSDDGDI RVEGKVKDGT PHLTLVGPFS VDVSLEGNLL LCRQVDQPGI IGKVGSILGT MNLNVNFMSV GRIAPGKQAI MAIGIDEEPD KEALKLIGET
601: PSVQEFVFLK L

Best Arabidopsis Sequence Match ( AT4G34200.1 )
(BLAST)

001: MSATAAASSS IAVATNSLRN VTLSSRSPLP SAISVAFPSR GRNTLQRRLV LVSCSTGDGS KPTILVAEKL GDAGIKLLED VANVDCSYNM TPEELNIKIS
101: LCDALIVRSG TKVGREVFES SHGRLKVVGR AGVGIDNVDL SAATEFGCLV VNAPTANTIA AAEHGIALMA AMARNVAQAD ASVKAGEWKR NKYVGVSLVG
201: KTLAVLGFGK VGTEVARRAK GLGMRVIAHD PYAPADRAHA IGVDLVSFDE ALATADFISL HMPLTPTTSK ILNDETFAKM KKGVRIVNVA RGGVIDEDAL
301: VRALDAGIVA QAALDVFTKE PPAKDSKLVQ HERVTVTPHL GASTMEAQEG VAIEIAEAVV GALNGELAAT AVNAPMVSAE VLTELKPYVV LAEKLGRLAV
401: QLVAGGSGVK NAKITYASAR ATDDLDTRLL RAMITKGIIE PISDVYVNLV NADFTAKQRG LRLSEERVLL DGSPESPLET ITVQLSNVES KFASSLSESG
501: EVKVEGKVKD GVPHLTKVGS FEVDVTLEGS IILCRQVDQP GMIGTVGSIL GESNVNVNFM SVGRIAPRKQ AIMAIGVDDI PSKETLKKIG EIPAVEEFVF
601: LKL

Arabidopsis Description

PGDH1D-3-phosphoglycerate dehydrogenase [Source:UniProtKB/TrEMBL;Acc:A0A178UWV4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.