CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

plastid 8
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

extracellular: 25724908

msms PMID: 25724908 doi

VC Clarke, PC Loughlin, A Gavrin, C Chen, EM Brear, DA Day, PM Smith

From the ‡University of Sydney, School of Biological Sciences, Sydney Australia;, From the ‡University of Sydney, School of Biological Sciences, Sydney Australia; penny.smith@sydney.edu.au., From the ‡University of Sydney, School of Biological Sciences, Sydney Australia; §Flinders University, School of Biological Sciences, Adelaide Australia.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH44645	Soybean	nucleus	71.84	67.79
KRH47008	Soybean	endoplasmic reticulum	71.84	67.58
HORVU7Hr1G111190.2	Barley	mitochondrion	60.24	66.86
KRH35731	Soybean	nucleus	65.19	64.31
KRG91030	Soybean	endoplasmic reticulum	64.51	63.53
EES15079	Sorghum	plastid	66.38	62.84
TraesCS7B01G400800.1	Wheat	plastid	64.33	61.7
HORVU1Hr1G056180.2	Barley	plastid	64.85	61.69
TraesCS1D01G222600.2	Wheat	plastid	65.02	61.55
TraesCS1B01G234300.2	Wheat	plastid	65.02	61.55
TraesCS7D01G483800.1	Wheat	plastid	63.99	61.48
Zm00001d046923_P001	Maize	plastid	61.77	61.46
TraesCS7A01G496500.1	Wheat	plastid	63.99	61.27
TraesCS3A01G146800.1	Wheat	plastid	64.68	61.13
Os08t0447000-01	Rice	plastid	64.68	61.03
TraesCS1A01G221000.1	Wheat	plastid	59.56	59.86
EER90146	Sorghum	mitochondrion, plastid	62.46	59.71
Os06t0655100-00	Rice	plastid	63.31	58.61
Zm00001d032114_P001	Maize	plastid	65.19	57.97
KRH44352	Soybean	peroxisome	7.34	28.1
KRH47286	Soybean	nucleus	14.85	27.8
KRH36064	Soybean	nucleus	17.75	26.94
KRG90684	Soybean	nucleus	17.24	26.17
KRH09880	Soybean	cytosol	12.46	24.09
KRH48312	Soybean	cytosol	13.82	24.04
KRH65202	Soybean	cytosol	9.22	24.0
KRH48310	Soybean	cytosol	13.31	23.35
KRH48313	Soybean	cytosol	12.8	22.32
KRH48311	Soybean	cytosol	12.63	22.16
KRG93315	Soybean	mitochondrion	14.16	22.13
KRH62463	Soybean	mitochondrion	14.51	21.74
KRH20294	Soybean	cytosol, endoplasmic reticulum, mitochondrion, nucleus	13.65	20.62
KRH65201	Soybean	plastid	10.07	20.56
KRG93317	Soybean	nucleus	13.48	20.31

Protein Annotations

KEGG:00260+1.1.1.95	KEGG:00680+1.1.1.95	EntrezGene:100806526	Gene3D:3.30.1330.90	Gene3D:3.30.70.260	Gene3D:3.40.50.720
MapMan:4.1.4.1.1	InterPro:ACT_dom	EMBL:ACUP02008482	InterPro:ASB_dom_sf	InterPro:D-isomer_2_OHA_DH_cat_dom	InterPro:D-isomer_DH_CS
InterPro:D-isomer_DH_CS1	InterPro:D-isomer_DH_NAD-bd	EnsemblPlantsGene:GLYMA_13G372200	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0004617	GO:GO:0005488	GO:GO:0006564	GO:GO:0008150	GO:GO:0008152	GO:GO:0008652
GO:GO:0009058	GO:GO:0009987	GO:GO:0016491	GO:GO:0016616	GO:GO:0051287	GO:GO:0055114
UniProt:I1M611	InterPro:IPR002912	InterPro:IPR029009	EnsemblPlants:KRH23702	ProteinID:KRH23702	ProteinID:KRH23702.1
InterPro:NAD(P)-bd_dom_sf	PFAM:PF00389	PFAM:PF01842	PFAM:PF02826	InterPro:PGDH	ScanProsite:PS00065
ScanProsite:PS00670	ScanProsite:PS00671	PFscan:PS51671	PANTHER:PTHR42938	PANTHER:PTHR42938:SF14	SUPFAM:SSF143548
SUPFAM:SSF51735	SUPFAM:SSF52283	SUPFAM:SSF55021	TIGRFAMs:TIGR01327	UniParc:UPI000233B973	SEG:seg

Description

hypothetical protein

Coordinates

chr13:+:45726978..45729238

Molecular Weight (calculated)

62897.1 Da

IEP (calculated)

8.468

GRAVY (calculated)

0.057

Length

586 amino acids

Sequence
(BLAST)

001: MACTKATFTF SQYCSDRCSS SRRRRRASAV SFFNGNSVMR LSSHRGALLT NNVLETSKSK DKSSSNNNII LVSEKLGEAG LKVLREWGDV ECAYDLSPEE
101: LCSKISCCDA LIVRSATKVT REVFQASKGR LKVVGRAGVG IDNVDLQAAT EFGCIVVNAP TSNTVAAAEL AIAHLAAMAR NVARADASMK ASKWERNKYV
201: GVSMVGKTVA IMGFGKVGYE VARRAKAALG MNVVAHDPYA SADRASAIGV HLVSFDEAIS NADFISLHMP LIPSTHKIFN HTSFAKMKRG ARIINVARGG
301: VIDEDDLVRA LDDGTVAEAA LDVFTEEPPA KDSKLVKHEK VTVTPHLGGS TKEAQEGVAI EIAEAVMGAL KGELSARAVN APAVPTELVA ELAPYVVLAE
401: KLGRVAVQLV SESRDVKVVY RSADLDTRLL RAMIIKGLIE PTSNSAINLV NADFIAKEKG VRISEEIIAG VELIDSIQLQ ISNVISIEGK VKYGSPHLTR
501: VGSFDVDVSL EGNLILYRQV DQPGMIGRVG TILGQHNINV SFMSLGRTCR RKMAIVAIGV DEEPSKEALQ HIGSLPAIQD LVFLKL

Best Arabidopsis Sequence Match ( AT1G17745.1 )
(BLAST)

001: MAFSSSCSSV KAVNSRWTSP SPSPSSRFAV LPAFLHRRYA TSVKLTAISA ALKTVEQTTL TEDNRFSTVG SDSDEYNPTL PKPRILVTEK LGEAGVNLLR
101: EFGDVDCSYD LSPEDLKKKV AESDALIVRS GTKVTREVFE AAKGRLKVVG RAGVGIDNVD LQAATEHGCL VVNAPTANTV AAAEHGIALL ASMARNVAQA
201: DASIKAGKWE RSKYVGVSLV GKTLAVMGFG KVGTEVARRA KGLGMTVISH DPYAPADRAR ALGVDLVSFD QAISTADFVS LHMPLTPATK KVFNDETFSK
301: MKKGVRLINV ARGGVIDEDA LVRALDAGIV AQAALDVFCE EPPSKDSRLI QHENVTVTPH LGASTKEAQE GVAIEIAEAV AGALKGELSA TAVNAPMVAP
401: EVLSELTPYI VLAEKLGRLA VQLASGGKGV QSIRVVYRSA RDRDDLDTRL LRAMITKGII EPISDSYVNL VNADFIAKQK GLRISEERMV VDSSPEYPVD
501: SIQVQILNVE SNFAGAVSDA GDISIEGKVK YGVPHLTCVG SFGVDVSLEG NLILCRQVDQ PGMIGQVGNI LGEQNVNVNF MSVGRTVLRK QAIMAIGVDE
601: EPDNKTLERI GGVSAIEEFV FLKL

Arabidopsis Description

PGDHD-3-phosphoglycerate dehydrogenase [Source:TAIR;Acc:AT1G17745]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.