CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 9
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
extracellular: 25724908
endoplasmic reticulum: 27224218
nucleus: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 25724908 doi

VC Clarke, PC Loughlin, A Gavrin, C Chen, EM Brear, DA Day, PM Smith

From the ‡University of Sydney, School of Biological Sciences, Sydney Australia;, From the ‡University of Sydney, School of Biological Sciences, Sydney Australia; penny.smith@sydney.edu.au., From the ‡University of Sydney, School of Biological Sciences, Sydney Australia; §Flinders University, School of Biological Sciences, Adelaide Australia.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG91030	Soybean	endoplasmic reticulum	96.63	96.47
HORVU2Hr1G113180.3	Barley	cytosol	64.31	84.33
Solyc03g112070.2.1	Tomato	plastid	84.34	83.5
PGSC0003DMT400046698	Potato	plastid	84.01	83.17
CDY57737	Canola	cytosol	23.91	83.04
CDX72462	Canola	plastid	82.32	81.77
CDY49286	Canola	plastid	82.32	81.77
Bra017637.1-P	Field mustard	plastid	82.15	81.61
CDY22972	Canola	plastid	80.47	81.43
CDX75409	Canola	plastid	81.65	81.38
CDX82295	Canola	plastid	80.13	81.09
Bra001747.1-P	Field mustard	plastid	79.8	80.75
AT3G19480.1	Thale cress	plastid	79.63	80.44
Bra034616.1-P	Field mustard	plastid	81.14	80.2
CDX76268	Canola	plastid	80.98	80.17
VIT_03s0180g00130.t01	Wine grape	cytosol	87.88	79.94
AT4G34200.1	Thale cress	plastid	80.81	79.6
CDY57736	Canola	plastid	50.17	78.22
Bra011506.1-P	Field mustard	plastid	81.31	77.78
CDX69034	Canola	plastid	81.99	77.06
GSMUA_Achr4P11440_001	Banana	plastid	73.74	76.98
Zm00001d026472_P001	Maize	plastid	78.96	76.63
GSMUA_Achr4P04100_001	Banana	plastid	74.58	76.38
Os04t0650800-01	Rice	plastid	78.79	76.35
EES12983	Sorghum	plastid	79.63	76.29
Zm00001d002051_P001	Maize	plastid	79.46	75.4
TraesCS2A01G508900.1	Wheat	plastid	77.95	75.16
KRH47008	Soybean	endoplasmic reticulum	75.25	71.75
KRH44645	Soybean	nucleus	74.58	71.34
KRH23702	Soybean	extracellular	64.31	65.19
KRH47286	Soybean	nucleus	14.81	28.11
KRH48312	Soybean	cytosol	15.49	27.3
KRH36064	Soybean	nucleus	17.68	27.2
KRH65202	Soybean	cytosol	10.27	27.11
KRG90684	Soybean	nucleus	17.34	26.68
KRH44352	Soybean	peroxisome	6.73	26.14
KRH09880	Soybean	cytosol	12.96	25.41
KRH48310	Soybean	cytosol	14.14	25.15
KRH62463	Soybean	mitochondrion	16.33	24.81
KRH48311	Soybean	cytosol	13.47	23.95
KRG93315	Soybean	mitochondrion	14.48	22.93
KRH65201	Soybean	plastid	10.94	22.65
KRH48313	Soybean	cytosol	12.63	22.32
KRH20294	Soybean	cytosol, endoplasmic reticulum, mitochondrion, nucleus	14.48	22.16
KRG93317	Soybean	nucleus	14.14	21.59

Protein Annotations

KEGG:00260+1.1.1.95	KEGG:00270+3.3.1.1	KEGG:00680+1.1.1.95	EntrezGene:100819264	Gene3D:3.30.1330.90	Gene3D:3.30.70.260
Gene3D:3.40.50.720	MapMan:4.1.4.1.1	InterPro:ACT_dom	EMBL:ACUP02006701	InterPro:ASB_dom_sf	InterPro:Ado_hCys_hydrolase_NAD-bd
InterPro:D-isomer_2_OHA_DH_cat_dom	InterPro:D-isomer_DH_CS	InterPro:D-isomer_DH_CS1	InterPro:D-isomer_DH_NAD-bd	EnsemblPlantsGene:GLYMA_10G261400	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0004617	GO:GO:0005488	GO:GO:0006564	GO:GO:0008150
GO:GO:0008152	GO:GO:0008652	GO:GO:0009058	GO:GO:0009987	GO:GO:0016491	GO:GO:0016616
GO:GO:0051287	GO:GO:0055114	UniProt:I1LEI9	InterPro:IPR002912	InterPro:IPR029009	EnsemblPlants:KRH35731
ProteinID:KRH35731	ProteinID:KRH35731.1	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00389	PFAM:PF01842	PFAM:PF02826
InterPro:PGDH	ScanProsite:PS00065	ScanProsite:PS00670	ScanProsite:PS00671	PFscan:PS51671	PANTHER:PTHR42938
PANTHER:PTHR42938:SF14	MetaCyc:PWY-5041	SMART:SM00997	SUPFAM:SSF143548	SUPFAM:SSF51735	SUPFAM:SSF52283
SUPFAM:SSF55021	TIGRFAMs:TIGR01327	UniParc:UPI0001D841A7	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr10:-:48650467..48653656

Molecular Weight (calculated)

62616.0 Da

IEP (calculated)

6.730

GRAVY (calculated)

0.178

Length

594 amino acids

Sequence
(BLAST)

001: MATATSQTLR FQSPSLSLSS KIPLSAFSVS LRPQRRASRH LVLVVSAGLD AKPTVLVAEK LGDAGLKLLK DFANVDCSYN LSTEELCTKI SLCDALIVRS
101: GTKVSREVFE SSAGRLKVVG RAGVGIDNVD LAAATEHGCL VVNAPTANTV AAAEHGIALL AAMARNVAQA DASVKAGKWQ RNKYVGVSLV GKTLAVLGFG
201: KVGSEVARRA KGLGMNVIAH DPYAPADRAR AIGVELVNFD EAIATADFIS LHMPLTAATS KILNDETFAK MKKGVRIVNV ARGGVIDEDA LVRALDSGIV
301: AQAALDVFTE EPPPKDSKLI LHELVTATPH LGASTMEAQE GVAIEIAEAV VGALKGELAA TAVNAPMVPS EVLTELKPFI DLAEKLGRLA VQLVAGGSGV
401: KTVKVTYATS RGPDDLDTRL LRAMITKGLI EPISSVFVNL VNADFTAKQR GIRITEEKVI LDGSPENPLE FVQVQIANVE SRFASAISDS GEIKVEGRVK
501: DGIPHLTKVG SFDVDVSLEG SIILCRQVDQ PGMIGKVGSV LGEENVNVSF MSVGRIAPRK QAVMAIGVDE QPSKESLKKI GDIPAVEEFV FLKL

Best Arabidopsis Sequence Match ( AT4G34200.1 )
(BLAST)

001: MSATAAASSS IAVATNSLRN VTLSSRSPLP SAISVAFPSR GRNTLQRRLV LVSCSTGDGS KPTILVAEKL GDAGIKLLED VANVDCSYNM TPEELNIKIS
101: LCDALIVRSG TKVGREVFES SHGRLKVVGR AGVGIDNVDL SAATEFGCLV VNAPTANTIA AAEHGIALMA AMARNVAQAD ASVKAGEWKR NKYVGVSLVG
201: KTLAVLGFGK VGTEVARRAK GLGMRVIAHD PYAPADRAHA IGVDLVSFDE ALATADFISL HMPLTPTTSK ILNDETFAKM KKGVRIVNVA RGGVIDEDAL
301: VRALDAGIVA QAALDVFTKE PPAKDSKLVQ HERVTVTPHL GASTMEAQEG VAIEIAEAVV GALNGELAAT AVNAPMVSAE VLTELKPYVV LAEKLGRLAV
401: QLVAGGSGVK NAKITYASAR ATDDLDTRLL RAMITKGIIE PISDVYVNLV NADFTAKQRG LRLSEERVLL DGSPESPLET ITVQLSNVES KFASSLSESG
501: EVKVEGKVKD GVPHLTKVGS FEVDVTLEGS IILCRQVDQP GMIGTVGSIL GESNVNVNFM SVGRIAPRKQ AIMAIGVDDI PSKETLKKIG EIPAVEEFVF
601: LKL

Arabidopsis Description

PGDH1D-3-phosphoglycerate dehydrogenase [Source:UniProtKB/TrEMBL;Acc:A0A178UWV4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.