Factsheet for GSMUA_Achr4P11440_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P04100_001	Banana	plastid	89.28	87.59
HORVU2Hr1G113180.3	Barley	cytosol	63.09	79.25
Os04t0650800-01	Rice	plastid	80.32	74.55
Zm00001d026472_P001	Maize	plastid	79.79	74.18
EES12983	Sorghum	plastid	80.67	74.03
KRG91030	Soybean	endoplasmic reticulum	77.33	73.95
KRH35731	Soybean	nucleus	76.98	73.74
Zm00001d002051_P001	Maize	plastid	81.02	73.64
PGSC0003DMT400059818	Potato	plastid	76.8	73.45
Solyc10g049890.1.1	Tomato	plastid	76.63	73.28
TraesCS2A01G508900.1	Wheat	plastid	78.56	72.56
Solyc03g112070.2.1	Tomato	plastid	75.92	72.0
PGSC0003DMT400046698	Potato	plastid	75.57	71.67
VIT_18s0001g09890.t01	Wine grape	plastid	76.1	71.57
CDX75409	Canola	plastid	74.87	71.48
CDX82295	Canola	plastid	73.64	71.38
CDY49286	Canola	plastid	74.87	71.24
CDX72462	Canola	plastid	74.87	71.24
Bra017637.1-P	Field mustard	plastid	74.87	71.24
CDY22972	Canola	plastid	73.46	71.21
CDX76268	Canola	plastid	75.04	71.17
Bra034616.1-P	Field mustard	plastid	74.87	70.88
Bra001747.1-P	Field mustard	plastid	72.94	70.7
AT4G34200.1	Thale cress	plastid	74.87	70.65
AT3G19480.1	Thale cress	plastid	72.94	70.58
CDY57736	Canola	plastid	46.92	70.08
GSMUA_Achr10P...	Banana	plastid	75.4	69.64
CDY57737	Canola	cytosol	20.91	69.59
VIT_03s0180g00130.t01	Wine grape	cytosol	79.09	68.91
Bra011506.1-P	Field mustard	plastid	74.52	68.28
GSMUA_Achr3P27990_001	Banana	plastid	73.46	67.97
GSMUA_Achr9P22790_001	Banana	plastid	62.57	67.81
CDX69034	Canola	plastid	75.04	67.56
GSMUA_Achr4P17980_001	Banana	cytosol	6.5	34.58
GSMUA_Achr3P31530_001	Banana	cytosol	15.64	28.16
GSMUA_Achr5P14430_001	Banana	mitochondrion	14.76	27.63
GSMUA_Achr5P18940_001	Banana	cytosol	7.56	27.39
GSMUA_Achr5P14420_001	Banana	cytosol	15.82	27.27
GSMUA_Achr3P03420_001	Banana	cytosol	14.94	26.9
GSMUA_Achr3P21910_001	Banana	cytosol	15.82	26.39
GSMUA_Achr5P18950_001	Banana	cytosol	9.31	23.56
GSMUA_Achr3P01200_001	Banana	mitochondrion	13.53	20.1

Protein Annotations

KEGG:00260+1.1.1.95	KEGG:00270+3.3.1.1	KEGG:00680+1.1.1.95	Gene3D:3.30.1330.90	Gene3D:3.30.70.260	Gene3D:3.40.50.720
MapMan:4.1.4.1.1	InterPro:ACT_dom	InterPro:ASB_dom_sf	InterPro:Ado_hCys_hydrolase_NAD-bd	InterPro:D-isomer_2_OHA_DH_cat_dom	InterPro:D-isomer_DH_CS
InterPro:D-isomer_DH_CS1	InterPro:D-isomer_DH_NAD-bd	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004617
GO:GO:0005488	GO:GO:0006564	GO:GO:0008150	GO:GO:0008152	GO:GO:0008652	GO:GO:0009058
GO:GO:0009987	GO:GO:0016491	GO:GO:0016616	GO:GO:0051287	GO:GO:0055114	EnsemblPlantsGene:GSMUA_Achr4G11440_001
EnsemblPlants:GSMUA_Achr4P11440_001	EnsemblPlants:GSMUA_Achr4T11440_001	InterPro:IPR002912	InterPro:IPR029009	UniProt:M0SN09	InterPro:NAD(P)-bd_dom_sf
PFAM:PF00389	PFAM:PF01842	PFAM:PF02826	InterPro:PGDH	ScanProsite:PS00065	ScanProsite:PS00670
ScanProsite:PS00671	PFscan:PS51671	PANTHER:PTHR42938	PANTHER:PTHR42938:SF14	SMART:SM00997	SUPFAM:SSF143548
SUPFAM:SSF51735	SUPFAM:SSF52283	SUPFAM:SSF55021	TIGRFAMs:TIGR01327	UniParc:UPI000294A9EB	SEG:seg

Description

D-3-phosphoglycerate dehydrogenase, chloroplastic [Source:GMGC_GENE;Acc:GSMUA_Achr4G11440_001]

Coordinates

chr4:-:8232187..8236777

Molecular Weight (calculated)

60139.1 Da

IEP (calculated)

6.851

GRAVY (calculated)

0.157

Length

569 amino acids

Sequence
(BLAST)

001: MAAIFAPADP LSLSRRPLLP SRLPATPFLR HRRPRFVAMA EEPGEANSKP RVLVAEKLGR GGLDLLKGFA DVDCAYNLSP EELRAKIALC DALIVRSGTK
101: VGRDVFEASG GRLRVVGRAG VGIDNVDLAA ATEHGCLVVN APTANTVAAA EHGIALLTAM ARNIARSDAS MKSGKWERNK YVGVSLVGKT LAILGFGKVG
201: SEVARRAKGL GLHVIAHDPY AAADRAHAVG VDLVTFDEAI TRADFISLHM PLTPSTSKIL NDEAFAKMKN GVRIINVARG GVIDEEALVK ALDSGVVAQA
301: ALDVFTKEPP SADNKLVLHE KVTATPHLGA STVEAQEEVA IEIAEAVLGA LKGELASTSV NAPMVPAEVL SELTPFVVLA EKLGRLAVQL VAGGSGVKSV
401: KVTYAIAITR GDLDTRLLRA MITKGLIEPV SDVHVNIVNA DFTAKQRGIR IAEERILLDG SPEDPIDSIQ VHIANDGIPH LTKVGSFQVD ASMEGSLILC
501: RQVDQPGMIG TVGSILGEQN VNVSFMSVGR IAPRKHAVMA IGVDDEPTKE ALKKIGDIPA IEEFVFLKL

Best Arabidopsis Sequence Match ( AT4G34200.1 )
(BLAST)

001: MSATAAASSS IAVATNSLRN VTLSSRSPLP SAISVAFPSR GRNTLQRRLV LVSCSTGDGS KPTILVAEKL GDAGIKLLED VANVDCSYNM TPEELNIKIS
101: LCDALIVRSG TKVGREVFES SHGRLKVVGR AGVGIDNVDL SAATEFGCLV VNAPTANTIA AAEHGIALMA AMARNVAQAD ASVKAGEWKR NKYVGVSLVG
201: KTLAVLGFGK VGTEVARRAK GLGMRVIAHD PYAPADRAHA IGVDLVSFDE ALATADFISL HMPLTPTTSK ILNDETFAKM KKGVRIVNVA RGGVIDEDAL
301: VRALDAGIVA QAALDVFTKE PPAKDSKLVQ HERVTVTPHL GASTMEAQEG VAIEIAEAVV GALNGELAAT AVNAPMVSAE VLTELKPYVV LAEKLGRLAV
401: QLVAGGSGVK NAKITYASAR ATDDLDTRLL RAMITKGIIE PISDVYVNLV NADFTAKQRG LRLSEERVLL DGSPESPLET ITVQLSNVES KFASSLSESG
501: EVKVEGKVKD GVPHLTKVGS FEVDVTLEGS IILCRQVDQP GMIGTVGSIL GESNVNVNFM SVGRIAPRKQ AIMAIGVDDI PSKETLKKIG EIPAVEEFVF
601: LKL

Arabidopsis Description

PGDH1D-3-phosphoglycerate dehydrogenase [Source:UniProtKB/TrEMBL;Acc:A0A178UWV4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.