Factsheet for VIT_03s0180g00130.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 5
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH35731	Soybean	nucleus	79.94	87.88
KRG91030	Soybean	endoplasmic reticulum	79.94	87.73
HORVU2Hr1G113180.3	Barley	cytosol	59.88	86.31
Solyc03g112070.2.1	Tomato	plastid	78.87	85.83
PGSC0003DMT400059818	Potato	plastid	77.95	85.55
PGSC0003DMT400046698	Potato	plastid	78.41	85.33
Solyc10g049890.1.1	Tomato	plastid	77.64	85.21
CDY57737	Canola	cytosol	22.05	84.21
VIT_18s0001g09890.t01	Wine grape	plastid	76.57	82.64
CDX75409	Canola	plastid	74.27	81.38
CDX72462	Canola	plastid	74.12	80.94
CDY49286	Canola	plastid	74.12	80.94
Bra017637.1-P	Field mustard	plastid	73.97	80.77
CDX82295	Canola	plastid	72.43	80.58
Bra034616.1-P	Field mustard	plastid	74.12	80.53
CDX76268	Canola	plastid	73.97	80.5
CDY22972	Canola	plastid	71.98	80.07
AT3G19480.1	Thale cress	plastid	71.98	79.93
Zm00001d026472_P001	Maize	plastid	74.89	79.9
EES12983	Sorghum	plastid	75.8	79.84
Bra001747.1-P	Field mustard	plastid	71.67	79.73
Os04t0650800-01	Rice	plastid	74.58	79.45
AT4G34200.1	Thale cress	plastid	73.2	79.27
GSMUA_Achr4P11440_001	Banana	plastid	68.91	79.09
Zm00001d002051_P001	Maize	plastid	75.19	78.43
Bra011506.1-P	Field mustard	plastid	73.97	77.78
CDY57736	Canola	plastid	45.33	77.69
TraesCS2A01G508900.1	Wheat	plastid	73.05	77.44
CDX69034	Canola	plastid	74.58	77.06
GSMUA_Achr4P04100_001	Banana	plastid	67.84	76.38
VIT_09s0018g01870.t01	Wine grape	plastid	69.53	72.76
VIT_02s0025g04750.t01	Wine grape	cytosol, plasma membrane	12.86	28.97
VIT_09s0002g04300.t01	Wine grape	cytosol	13.48	28.11
VIT_09s0002g04290.t01	Wine grape	cytosol, plastid	13.17	27.48
VIT_18s0041g01830.t01	Wine grape	cytosol	13.63	25.95
VIT_03s0038g02510.t01	Wine grape	cytosol, peroxisome, plastid	15.31	25.91
VIT_02s0025g04730.t01	Wine grape	cytosol	12.4	25.55
VIT_14s0066g01320.t01	Wine grape	mitochondrion	13.02	22.19
VIT_15s0048g01330.t01	Wine grape	mitochondrion, peroxisome, plastid	12.86	18.22

Protein Annotations

KEGG:00260+1.1.1.95	KEGG:00270+3.3.1.1	KEGG:00680+1.1.1.95	EntrezGene:100260655	wikigene:100260655	Gene3D:3.30.1330.90
Gene3D:3.30.70.260	Gene3D:3.40.50.720	MapMan:4.1.4.1.1	InterPro:ACT_dom	InterPro:ASB_dom_sf	InterPro:Ado_hCys_hydrolase_NAD-bd
ProteinID:CCB62353	ProteinID:CCB62353.1	InterPro:D-isomer_2_OHA_DH_cat_dom	InterPro:D-isomer_DH_CS	InterPro:D-isomer_DH_CS1	InterPro:D-isomer_DH_NAD-bd
UniProt:F6I5Y5	EMBL:FN596754	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004617
GO:GO:0005488	GO:GO:0006564	GO:GO:0008150	GO:GO:0008152	GO:GO:0008652	GO:GO:0009058
GO:GO:0009987	GO:GO:0016491	GO:GO:0016616	GO:GO:0051287	GO:GO:0055114	InterPro:IPR002912
InterPro:IPR029009	EntrezGene:LOC100260655	wikigene:LOC100260655	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00389	PFAM:PF01842
PFAM:PF02826	InterPro:PGDH	ScanProsite:PS00065	ScanProsite:PS00670	ScanProsite:PS00671	PFscan:PS51671
PANTHER:PTHR42938	PANTHER:PTHR42938:SF14	SMART:SM00997	SUPFAM:SSF143548	SUPFAM:SSF51735	SUPFAM:SSF52283
SUPFAM:SSF55021	TIGR:TC65741	TIGRFAMs:TIGR01327	UniParc:UPI00015C90B8	ArrayExpress:VIT_03s0180g00130	EnsemblPlantsGene:VIT_03s0180g00130
EnsemblPlants:VIT_03s0180g00130.t01	unigene:Vvi.250	RefSeq:XP_002285358	RefSeq:XP_002285358.1	SEG:seg	:

Description

D-3-phosphoglycerate dehydrogenase [Source:UniProtKB/TrEMBL;Acc:F6I5Y5]

Coordinates

chr3:-:6060227..6064528

Molecular Weight (calculated)

68913.8 Da

IEP (calculated)

8.094

GRAVY (calculated)

0.171

Length

653 amino acids

Sequence
(BLAST)

001: MKTIQTTPKP FIDFPAPNHG RDHRKTTIKC IIGSCLTSTI SSTVPTAQLS TIHLRHTAMA AASSSTLFPS NKLSSNSLSR KLSLAPAFSV AVVVPRRRRS
101: LVVVATALDA KPTVLVAEKL GAAGLDLLKD FANVDCAYNL SPEELCTKIS LCDALIVRSG TKVSREVFEA SSGRLKVVGR AGVGIDNVDL AAATEHGCLV
201: VNAPTANTVA AAEHGIALLT AMARNVAQAD ASVKSGKWQR NKYVGVSLVG KTLAVMGFGK VGSEVTRRAK GLGMHVIAHD PYAAADRARA IGVELVGFDE
301: AISTADFISL HMPLTPATSK MLNDETFAKM KKGVRIINVA RGGVIDEEAL VRALDAGIVA QAALDVFTEE PPPKDSKLIL HENVTVTPHL GASTMEAQEG
401: VAIEIAEAVV GALKGELAAT AVNAPMVPAE VLSELKPFVE LAEKLGRLAV QLVSGGSGVK SVKVTYASAR APDDLDTRLL RAMITKGLIE PISSVFVNLV
501: NADFSAKQRG LRITEERSIL DGSPESPLEF IQVQIANVES KFASAISESG EITVEGRVKD GIPHLTKVGS FEVDVSLEGS IILCRQVDQP GMIGKVGSIL
601: GEENVNVSFM SVGRVAPRKH AVMAIGVDEQ PSKVTLKKIG EIPAVEEFVF LKL

Best Arabidopsis Sequence Match ( AT4G34200.1 )
(BLAST)

001: MSATAAASSS IAVATNSLRN VTLSSRSPLP SAISVAFPSR GRNTLQRRLV LVSCSTGDGS KPTILVAEKL GDAGIKLLED VANVDCSYNM TPEELNIKIS
101: LCDALIVRSG TKVGREVFES SHGRLKVVGR AGVGIDNVDL SAATEFGCLV VNAPTANTIA AAEHGIALMA AMARNVAQAD ASVKAGEWKR NKYVGVSLVG
201: KTLAVLGFGK VGTEVARRAK GLGMRVIAHD PYAPADRAHA IGVDLVSFDE ALATADFISL HMPLTPTTSK ILNDETFAKM KKGVRIVNVA RGGVIDEDAL
301: VRALDAGIVA QAALDVFTKE PPAKDSKLVQ HERVTVTPHL GASTMEAQEG VAIEIAEAVV GALNGELAAT AVNAPMVSAE VLTELKPYVV LAEKLGRLAV
401: QLVAGGSGVK NAKITYASAR ATDDLDTRLL RAMITKGIIE PISDVYVNLV NADFTAKQRG LRLSEERVLL DGSPESPLET ITVQLSNVES KFASSLSESG
501: EVKVEGKVKD GVPHLTKVGS FEVDVTLEGS IILCRQVDQP GMIGTVGSIL GESNVNVNFM SVGRIAPRKQ AIMAIGVDDI PSKETLKKIG EIPAVEEFVF
601: LKL

Arabidopsis Description

PGDH1D-3-phosphoglycerate dehydrogenase [Source:UniProtKB/TrEMBL;Acc:A0A178UWV4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.