Factsheet for VIT_09s0018g01870.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH47008	Soybean	endoplasmic reticulum	77.72	77.85
KRH44645	Soybean	nucleus	77.4	77.78
Solyc03g123830.2.1	Tomato	plastid	77.72	77.35
PGSC0003DMT400023675	Potato	plastid	78.53	76.8
GSMUA_Achr10P...	Banana	plastid	75.48	76.46
GSMUA_Achr3P27990_001	Banana	plastid	74.84	75.94
VIT_18s0001g09890.t01	Wine grape	plastid	72.28	74.55
CDX83893	Canola	plastid	74.2	74.44
CDX96754	Canola	plastid	74.04	74.4
Bra016589.1-P	Field mustard	plastid	73.88	74.24
GSMUA_Achr9P22790_001	Banana	plastid	61.54	73.14
AT1G17745.2	Thale cress	plastid	73.72	70.66
VIT_03s0180g00130.t01	Wine grape	cytosol	72.76	69.53
VIT_09s0002g04290.t01	Wine grape	cytosol, plastid	14.1	28.11
VIT_09s0002g04300.t01	Wine grape	cytosol	13.94	27.8
VIT_02s0025g04750.t01	Wine grape	cytosol, plasma membrane	12.5	26.9
VIT_03s0038g02510.t01	Wine grape	cytosol, peroxisome, plastid	16.35	26.42
VIT_18s0041g01830.t01	Wine grape	cytosol	14.42	26.24
VIT_02s0025g04730.t01	Wine grape	cytosol	12.66	24.92
VIT_14s0066g01320.t01	Wine grape	mitochondrion	13.78	22.45
VIT_15s0048g01330.t01	Wine grape	mitochondrion, peroxisome, plastid	13.14	17.79

Protein Annotations

KEGG:00260+1.1.1.95	KEGG:00680+1.1.1.95	EntrezGene:100241666	wikigene:100241666	Gene3D:3.30.1330.90	Gene3D:3.30.70.260
Gene3D:3.40.50.720	MapMan:4.1.4.1.1	InterPro:ACT_dom	EMBL:AM481350	InterPro:ASB_dom_sf	ProteinID:CAN68604
ProteinID:CAN68604.1	ProteinID:CCB49729	ProteinID:CCB49729.1	InterPro:D-isomer_2_OHA_DH_cat_dom	InterPro:D-isomer_DH_CS	InterPro:D-isomer_DH_CS1
InterPro:D-isomer_DH_NAD-bd	UniProt:F6HBZ6	EMBL:FN595513	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0004617	GO:GO:0005488	GO:GO:0006564	GO:GO:0008150	GO:GO:0008152	GO:GO:0008652
GO:GO:0009058	GO:GO:0009987	GO:GO:0016491	GO:GO:0016616	GO:GO:0051287	GO:GO:0055114
InterPro:IPR002912	InterPro:IPR029009	EntrezGene:LOC100241666	wikigene:LOC100241666	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00389
PFAM:PF01842	PFAM:PF02826	InterPro:PGDH	ScanProsite:PS00065	ScanProsite:PS00670	ScanProsite:PS00671
PFscan:PS51671	PANTHER:PTHR42938	PANTHER:PTHR42938:SF14	SUPFAM:SSF143548	SUPFAM:SSF51735	SUPFAM:SSF52283
SUPFAM:SSF55021	TIGR:TC53706	TIGRFAMs:TIGR01327	UniParc:UPI0001983F8A	ArrayExpress:VIT_09s0018g01870	EnsemblPlantsGene:VIT_09s0018g01870
EnsemblPlants:VIT_09s0018g01870.t01	unigene:Vvi.21524	unigene:Vvi.5949	RefSeq:XP_002273552	RefSeq:XP_002273552.1	SEG:seg

Description

D-3-phosphoglycerate dehydrogenase [Source:UniProtKB/TrEMBL;Acc:F6HBZ6]

Coordinates

chr9:+:19476936..19482695

Molecular Weight (calculated)

66291.3 Da

IEP (calculated)

8.385

GRAVY (calculated)

0.058

Length

624 amino acids

Sequence
(BLAST)

001: MASVSAKIIS STAAAVATAT GGNTTTTRSS CLPVFRRGPA TPLPLKLSRR RRHHVRHITN VFKTVESPAA PPTLDPVRQV QKPTILVSEK LGEAGLEVLR
101: EFGEVECSYD LSQEDLCKKI SLCDALIVRS GTKVTRAVFE AAKGRLKVVG RAGVGIDNVD LQAATEFGCL VVNAPTANTI AAAEHGIALL AAMARNVAQA
201: DASMKAGKWQ RNKYVGVSLV GKTLAVMGFG KVGSEVARRA KGLGMHVIAH DPYAPADRAR AAGVDLVSFD LAISTADFIS LHMPLTPTTK KIFNDETFAK
301: VKKGVRIINV ARGGVIDEDA LVRALDSGAV AQAALDVFTE EPPPKDSKLV QHENVTVTPH LGASTKEAQE GVAIEIAEAV VGALRGELSA TAVNAPMVPP
401: EVISELSPYV VLAEKLGRLA VQLVAGGSGI KSVKVVYKTA RDPDDLDTRL LRAMVTKGII EPISSSFINL VNADFTAKQK GLRISEERVS IDSSPENPVE
501: SIQVQISNVD SKFASAVSEN EYISIEGKVK DGIPRLTCVG SFSVDVSLEG NLILCRQVDQ PGMIGRVGNI LGECNVNVSF MSVGRTVKRT RAIMAIGVDE
601: EPDKDTLKKI GEVPAIEEFV FLKL

Best Arabidopsis Sequence Match ( AT1G17745.1 )
(BLAST)

001: MAFSSSCSSV KAVNSRWTSP SPSPSSRFAV LPAFLHRRYA TSVKLTAISA ALKTVEQTTL TEDNRFSTVG SDSDEYNPTL PKPRILVTEK LGEAGVNLLR
101: EFGDVDCSYD LSPEDLKKKV AESDALIVRS GTKVTREVFE AAKGRLKVVG RAGVGIDNVD LQAATEHGCL VVNAPTANTV AAAEHGIALL ASMARNVAQA
201: DASIKAGKWE RSKYVGVSLV GKTLAVMGFG KVGTEVARRA KGLGMTVISH DPYAPADRAR ALGVDLVSFD QAISTADFVS LHMPLTPATK KVFNDETFSK
301: MKKGVRLINV ARGGVIDEDA LVRALDAGIV AQAALDVFCE EPPSKDSRLI QHENVTVTPH LGASTKEAQE GVAIEIAEAV AGALKGELSA TAVNAPMVAP
401: EVLSELTPYI VLAEKLGRLA VQLASGGKGV QSIRVVYRSA RDRDDLDTRL LRAMITKGII EPISDSYVNL VNADFIAKQK GLRISEERMV VDSSPEYPVD
501: SIQVQILNVE SNFAGAVSDA GDISIEGKVK YGVPHLTCVG SFGVDVSLEG NLILCRQVDQ PGMIGQVGNI LGEQNVNVNF MSVGRTVLRK QAIMAIGVDE
601: EPDNKTLERI GGVSAIEEFV FLKL

Arabidopsis Description

PGDHD-3-phosphoglycerate dehydrogenase [Source:TAIR;Acc:AT1G17745]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.