CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra016589.1-P	Field mustard	plastid	99.84	99.84
CDX83893	Canola	plastid	98.55	98.39
AT1G17745.2	Thale cress	plastid	90.98	86.79
CDY12275	Canola	cytosol	41.71	75.73
KRH44645	Soybean	nucleus	75.36	75.36
KRH47008	Soybean	endoplasmic reticulum	75.04	74.8
Solyc03g123830.2.1	Tomato	plastid	75.36	74.64
VIT_09s0018g01870.t01	Wine grape	plastid	74.4	74.04
PGSC0003DMT400023675	Potato	plastid	76.01	73.98
CDX75409	Canola	plastid	69.24	72.15
GSMUA_Achr10P...	Banana	plastid	71.18	71.75
CDY49286	Canola	plastid	68.92	71.57
CDX72462	Canola	plastid	68.92	71.57
GSMUA_Achr3P27990_001	Banana	plastid	70.85	71.54
CDX76268	Canola	plastid	69.08	71.5
CDY57737	Canola	cytosol	19.48	70.76
CDX82295	Canola	plastid	66.83	70.7
CDY22972	Canola	plastid	66.83	70.7
CDY57736	Canola	plastid	43.32	70.6
GSMUA_Achr9P22790_001	Banana	plastid	57.81	68.38
CDX69034	Canola	plastid	69.4	68.2
CDY17092	Canola	cytosol	5.48	32.08
CDX87280	Canola	cytosol	13.69	27.42
CDY58781	Canola	cytosol	13.53	26.84
CDY57070	Canola	cytosol	13.69	26.4
CDY16011	Canola	cytosol, peroxisome, plastid	12.56	26.35
CDY54697	Canola	mitochondrion	6.28	26.35
CDY07405	Canola	cytosol	16.26	26.17
CDY04198	Canola	cytosol	16.26	25.63
CDX67931	Canola	cytosol	12.88	25.56
CDX79406	Canola	cytosol	12.88	25.56
CDX98054	Canola	cytosol	13.85	24.93
CDX68275	Canola	mitochondrion	14.33	23.92
CDY50445	Canola	mitochondrion	14.33	23.86
CDY26572	Canola	cytosol	9.18	23.65
CDY26571	Canola	plastid	11.11	23.31
CDX85582	Canola	mitochondrion	14.17	22.98
CDX69558	Canola	mitochondrion	14.17	22.92
CDY09885	Canola	mitochondrion	14.01	22.72
CDX91020	Canola	mitochondrion	13.85	22.4
CDX96054	Canola	mitochondrion	16.1	21.83
CDY16012	Canola	cytosol, nucleus, peroxisome	8.37	21.58
CDY16010	Canola	cytosol, nucleus, plastid	14.81	16.7
CDY26570	Canola	cytosol	11.76	16.22
CDY01876	Canola	endoplasmic reticulum, plasma membrane	16.26	14.57

Protein Annotations

KEGG:00260+1.1.1.95	KEGG:00680+1.1.1.95	Gene3D:3.30.1330.90	Gene3D:3.30.70.260	Gene3D:3.40.50.720	MapMan:4.1.4.1.1
GO:A0A078E7R6	InterPro:ACT_dom	InterPro:ASB_dom_sf	EnsemblPlants:CDX96754	ProteinID:CDX96754	ProteinID:CDX96754.1
InterPro:D-isomer_2_OHA_DH_cat_dom	InterPro:D-isomer_DH_CS	InterPro:D-isomer_DH_CS1	InterPro:D-isomer_DH_NAD-bd	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0004617	GO:GO:0005488	GO:GO:0006564	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0016616	GO:GO:0051287	GO:GO:0055114	EnsemblPlantsGene:GSBRNA2T00102976001
InterPro:IPR002912	InterPro:IPR029009	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00389	PFAM:PF01842	PFAM:PF02826
InterPro:PGDH	ScanProsite:PS00065	ScanProsite:PS00670	ScanProsite:PS00671	PFscan:PS51671	PANTHER:PTHR42938
PANTHER:PTHR42938:SF14	SUPFAM:SSF143548	SUPFAM:SSF51735	SUPFAM:SSF52283	SUPFAM:SSF55021	TIGRFAMs:TIGR01327
UniPathway:UPA00135	UniParc:UPI0004EE7583	SEG:seg	:	:	:

Description

BnaA08g22970D

Coordinates

chrLK031895:-:845506..849821

Molecular Weight (calculated)

66155.5 Da

IEP (calculated)

5.790

GRAVY (calculated)

-0.006

Length

621 amino acids

Sequence
(BLAST)

001: MALSSSCSTL KAVNSRWTSP APKLAAIRRH SLLPELRYTP NVKLTATNAL RTVEQTTLTE DDHLSTYGSD QDDQESLPKP RILVAEKLGE AGVNLLKDFG
101: DVDCSYELSP EDLKKKVAES DALIVRSGTK VTREVFEAAK GRLKVVGRAG VGIDNVDLQA ATEYGCLVVN APTANTVAAA EHGIALLASM ARNVAQADAS
201: IKAGKWERSK YVGVSLVGKT LAIMGFGKVG TEVARRAKGL GMNVISHDPY APADRARALG VELVSFDQAI STADFISLHM PLTPATKKVF NDETFSKMKK
301: GVRLINVARG GVIDEDALVR ALDSGVVAQA ALDVFCEEPP SKESRLIQHE NVTVTPHLGA STKEAQEGVA IEIAEAVAGA LRGELSATAV NAPMVAPEVL
401: SELAPYIVLA EKLGRLAVQL ASGGKGVQSI KVVYRSARDR DDLDTRLLRA MITKGIIEPI SDSYVNLVNA DFIAKQKGLR ISEERTVVES SPEYPVDSIQ
501: VQISNVESSF AGAVSDGGAI SIEGKVKYGV PHLTCVGSFG VDVSLEGNLI LCRQVDQPGM IGQVGNILGE QNVNVSFMSV GRTVVRKQAI MAIGVDEEPD
601: KKTLERIGGV SAIEEFVFLK L

Best Arabidopsis Sequence Match ( AT1G17745.1 )
(BLAST)

001: MAFSSSCSSV KAVNSRWTSP SPSPSSRFAV LPAFLHRRYA TSVKLTAISA ALKTVEQTTL TEDNRFSTVG SDSDEYNPTL PKPRILVTEK LGEAGVNLLR
101: EFGDVDCSYD LSPEDLKKKV AESDALIVRS GTKVTREVFE AAKGRLKVVG RAGVGIDNVD LQAATEHGCL VVNAPTANTV AAAEHGIALL ASMARNVAQA
201: DASIKAGKWE RSKYVGVSLV GKTLAVMGFG KVGTEVARRA KGLGMTVISH DPYAPADRAR ALGVDLVSFD QAISTADFVS LHMPLTPATK KVFNDETFSK
301: MKKGVRLINV ARGGVIDEDA LVRALDAGIV AQAALDVFCE EPPSKDSRLI QHENVTVTPH LGASTKEAQE GVAIEIAEAV AGALKGELSA TAVNAPMVAP
401: EVLSELTPYI VLAEKLGRLA VQLASGGKGV QSIRVVYRSA RDRDDLDTRL LRAMITKGII EPISDSYVNL VNADFIAKQK GLRISEERMV VDSSPEYPVD
501: SIQVQILNVE SNFAGAVSDA GDISIEGKVK YGVPHLTCVG SFGVDVSLEG NLILCRQVDQ PGMIGQVGNI LGEQNVNVNF MSVGRTVLRK QAIMAIGVDE
601: EPDNKTLERI GGVSAIEEFV FLKL

Arabidopsis Description

PGDHD-3-phosphoglycerate dehydrogenase [Source:TAIR;Acc:AT1G17745]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.