CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY57737	Canola	cytosol	28.5	100.0
Bra034616.1-P	Field mustard	plastid	99.67	99.5
CDY12275	Canola	cytosol	55.33	97.08
CDY57736	Canola	plastid	61.0	96.06
CDX75409	Canola	plastid	94.67	95.3
CDY49286	Canola	plastid	94.17	94.48
CDX72462	Canola	plastid	94.0	94.31
CDX69034	Canola	plastid	95.17	90.35
HORVU2Hr1G113180.3	Barley	cytosol	63.0	83.44
PGSC0003DMT400059818	Potato	plastid	80.83	81.51
Solyc10g049890.1.1	Tomato	plastid	80.67	81.34
KRH35731	Soybean	nucleus	80.17	80.98
KRG91030	Soybean	endoplasmic reticulum	79.83	80.5
CDY22972	Canola	plastid	75.33	77.0
CDX82295	Canola	plastid	75.17	76.83
Os04t0650800-01	Rice	plastid	77.33	75.69
GSMUA_Achr4P11440_001	Banana	plastid	71.17	75.04
EES12983	Sorghum	plastid	77.17	74.68
Zm00001d026472_P001	Maize	plastid	76.17	74.67
TraesCS2A01G508900.1	Wheat	plastid	76.17	74.19
VIT_03s0180g00130.t01	Wine grape	cytosol	80.5	73.97
GSMUA_Achr4P04100_001	Banana	plastid	70.83	73.28
Zm00001d002051_P001	Maize	plastid	76.17	73.0
CDX96754	Canola	plastid	71.5	69.08
CDX83893	Canola	plastid	71.5	68.97
CDY17092	Canola	cytosol	5.33	30.19
CDY54697	Canola	mitochondrion	6.67	27.03
CDX87280	Canola	cytosol	13.33	25.81
CDY58781	Canola	cytosol	13.33	25.56
CDY57070	Canola	cytosol	13.67	25.47
CDX68275	Canola	mitochondrion	15.5	25.0
CDY16011	Canola	cytosol, peroxisome, plastid	12.33	25.0
CDY50445	Canola	mitochondrion	15.5	24.93
CDY07405	Canola	cytosol	16.0	24.87
CDY04198	Canola	cytosol	15.83	24.11
CDX67931	Canola	cytosol	12.5	23.96
CDX79406	Canola	cytosol	12.5	23.96
CDX98054	Canola	cytosol	13.67	23.77
CDX85582	Canola	mitochondrion	15.17	23.76
CDY09885	Canola	mitochondrion	14.83	23.24
CDX91020	Canola	mitochondrion	14.83	23.18
CDX69558	Canola	mitochondrion	14.83	23.18
CDY26572	Canola	cytosol	9.0	22.41
CDX96054	Canola	mitochondrion	16.33	21.4
CDY26571	Canola	plastid	10.5	21.28
CDY16012	Canola	cytosol, nucleus, peroxisome	8.5	21.16
CDY16010	Canola	cytosol, nucleus, plastid	14.33	15.61
CDY26570	Canola	cytosol	11.0	14.67
CDY01876	Canola	endoplasmic reticulum, plasma membrane	16.0	13.85

Protein Annotations

KEGG:00260+1.1.1.95	KEGG:00270+3.3.1.1	KEGG:00680+1.1.1.95	Gene3D:3.30.1330.90	Gene3D:3.30.70.260	Gene3D:3.40.50.720
MapMan:4.1.4.1.1	GO:A0A078CMG3	InterPro:ACT_dom	InterPro:ASB_dom_sf	InterPro:Ado_hCys_hydrolase_NAD-bd	EnsemblPlants:CDX76268
ProteinID:CDX76268	ProteinID:CDX76268.1	InterPro:D-isomer_2_OHA_DH_cat_dom	InterPro:D-isomer_DH_CS	InterPro:D-isomer_DH_CS1	InterPro:D-isomer_DH_NAD-bd
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004617	GO:GO:0005488	GO:GO:0006564
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016616	GO:GO:0051287
GO:GO:0055114	EnsemblPlantsGene:GSBRNA2T00126626001	InterPro:IPR002912	InterPro:IPR029009	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00389
PFAM:PF01842	PFAM:PF02826	InterPro:PGDH	ScanProsite:PS00065	ScanProsite:PS00670	ScanProsite:PS00671
PFscan:PS51671	PANTHER:PTHR42938	PANTHER:PTHR42938:SF14	MetaCyc:PWY-5041	SMART:SM00997	SUPFAM:SSF143548
SUPFAM:SSF51735	SUPFAM:SSF52283	SUPFAM:SSF55021	TIGRFAMs:TIGR01327	UniPathway:UPA00135	UniPathway:UPA00314
UniParc:UPI0001D84176	SEG:seg	:	:	:	:

Description

BnaA08g11320D

Coordinates

chrLK031807:-:42082..44384

Molecular Weight (calculated)

63089.4 Da

IEP (calculated)

6.220

GRAVY (calculated)

0.144

Length

600 amino acids

Sequence
(BLAST)

001: MSAAAASSAI SVATNPLKTF SLSSRSPLPS AISLPSRSLN TPRRRLVLVS CTAGDGSKPT ILVAEKLGEA GVKLLEGFAN VDCSYNMTPE ELNTKISLCD
101: ALIVRSGTKV GREVFESSRG RLKVVGRAGV GIDNVDLSAA TEFGCLVVNA PTANTIAAAE HGIALLASMA RNVAQSDASV KAGEWKRNKY VGVSLVGKTL
201: AVMGFGKVGT EVARRAKGLG MRVIAHDPYA PADRAHAIGV ELVSFDEALA TADFISLHMP LTPATNKILN DETFAKMKKG VRIVNVARGG VIDEDALVRA
301: LDAGIVSQAA LDVFTKEPPA IDSPLVQHEN VTVTPHLGAS TMEAQEGVAI EIAEAVVGAL NGELAATAVN APMVSAEVLT ELKPYVILAE KLGRLAVQLV
401: AGGSGVKNVK VSYTSARATD DLDTRLLRAM ITKGIIEPIS DVYVNLVNAD FTAKQRGLRL SEERVLLDGS PENPLETITV QLGNVESKFA SSLSESGEVK
501: VEGRVKDGIP HLTKVGSFEV DVTLEGSIIL CRQVDQPGMI GTVGSILGES NVNVNFMSVG RIAPRKQAIM AIGVDDQPSK ETLKKIGEIP AIEEFVFLKL

Best Arabidopsis Sequence Match ( AT4G34200.1 )
(BLAST)

001: MSATAAASSS IAVATNSLRN VTLSSRSPLP SAISVAFPSR GRNTLQRRLV LVSCSTGDGS KPTILVAEKL GDAGIKLLED VANVDCSYNM TPEELNIKIS
101: LCDALIVRSG TKVGREVFES SHGRLKVVGR AGVGIDNVDL SAATEFGCLV VNAPTANTIA AAEHGIALMA AMARNVAQAD ASVKAGEWKR NKYVGVSLVG
201: KTLAVLGFGK VGTEVARRAK GLGMRVIAHD PYAPADRAHA IGVDLVSFDE ALATADFISL HMPLTPTTSK ILNDETFAKM KKGVRIVNVA RGGVIDEDAL
301: VRALDAGIVA QAALDVFTKE PPAKDSKLVQ HERVTVTPHL GASTMEAQEG VAIEIAEAVV GALNGELAAT AVNAPMVSAE VLTELKPYVV LAEKLGRLAV
401: QLVAGGSGVK NAKITYASAR ATDDLDTRLL RAMITKGIIE PISDVYVNLV NADFTAKQRG LRLSEERVLL DGSPESPLET ITVQLSNVES KFASSLSESG
501: EVKVEGKVKD GVPHLTKVGS FEVDVTLEGS IILCRQVDQP GMIGTVGSIL GESNVNVNFM SVGRIAPRKQ AIMAIGVDDI PSKETLKKIG EIPAVEEFVF
601: LKL

Arabidopsis Description

PGDH1D-3-phosphoglycerate dehydrogenase [Source:UniProtKB/TrEMBL;Acc:A0A178UWV4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.