Factsheet for PGSC0003DMT400059818

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g049890.1.1	Tomato	plastid	98.82	98.82
PGSC0003DMT400046698	Potato	plastid	87.23	86.5
HORVU2Hr1G113180.3	Barley	cytosol	63.53	83.44
CDX75409	Canola	plastid	81.68	81.54
CDY57737	Canola	cytosol	23.36	81.29
Bra034616.1-P	Field mustard	plastid	81.68	80.87
CDX76268	Canola	plastid	81.51	80.83
CDX72462	Canola	plastid	80.34	79.93
CDY49286	Canola	plastid	80.34	79.93
Bra017637.1-P	Field mustard	plastid	80.17	79.77
AT4G34200.1	Thale cress	plastid	80.17	79.1
CDY57736	Canola	plastid	50.59	79.0
Bra011506.1-P	Field mustard	plastid	81.51	78.1
CDY22972	Canola	plastid	76.97	78.02
VIT_03s0180g00130.t01	Wine grape	cytosol	85.55	77.95
CDX82295	Canola	plastid	76.64	77.68
Bra001747.1-P	Field mustard	plastid	76.3	77.34
CDX69034	Canola	plastid	81.68	76.9
GSMUA_Achr4P11440_001	Banana	plastid	73.45	76.8
AT3G19480.1	Thale cress	plastid	75.8	76.7
Os04t0650800-01	Rice	plastid	78.99	76.67
EES12983	Sorghum	plastid	79.66	76.45
Zm00001d026472_P001	Maize	plastid	78.32	76.14
TraesCS2A01G508900.1	Wheat	plastid	77.82	75.16
Zm00001d002051_P001	Maize	plastid	78.99	75.08
GSMUA_Achr4P04100_001	Banana	plastid	72.61	74.48
PGSC0003DMT400023675	Potato	plastid	75.63	70.53
PGSC0003DMT400058518	Potato	cytosol	6.22	26.62
PGSC0003DMT400019586	Potato	extracellular	13.61	25.71
PGSC0003DMT400071027	Potato	cytosol	13.28	25.65
PGSC0003DMT400015828	Potato	cytosol	16.47	25.39
PGSC0003DMT400019584	Potato	cytosol	13.28	25.24
PGSC0003DMT400085920	Potato	mitochondrion	7.56	24.46
PGSC0003DMT400058520	Potato	cytosol	13.11	24.0
PGSC0003DMT400001303	Potato	mitochondrion	13.61	21.26
PGSC0003DMT400068907	Potato	cytosol	4.03	15.89

Protein Annotations

KEGG:00260+1.1.1.95	KEGG:00270+3.3.1.1	KEGG:00680+1.1.1.95	EntrezGene:102591151	Gene3D:3.30.1330.90	Gene3D:3.30.70.260
Gene3D:3.40.50.720	MapMan:4.1.4.1.1	InterPro:ACT_dom	InterPro:ASB_dom_sf	InterPro:Ado_hCys_hydrolase_NAD-bd	InterPro:D-isomer_2_OHA_DH_cat_dom
InterPro:D-isomer_DH_CS	InterPro:D-isomer_DH_CS1	InterPro:D-isomer_DH_NAD-bd	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0004617	GO:GO:0005488	GO:GO:0006564	GO:GO:0008150	GO:GO:0008152	GO:GO:0008652
GO:GO:0009058	GO:GO:0009987	GO:GO:0016491	GO:GO:0016616	GO:GO:0051287	GO:GO:0055114
InterPro:IPR002912	InterPro:IPR029009	UniProt:M1C4S4	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00389	PFAM:PF01842
PFAM:PF02826	InterPro:PGDH	EnsemblPlantsGene:PGSC0003DMG400023264	PGSC:PGSC0003DMG400023264	EnsemblPlants:PGSC0003DMT400059818	ScanProsite:PS00065
ScanProsite:PS00670	ScanProsite:PS00671	PFscan:PS51671	PANTHER:PTHR42938	PANTHER:PTHR42938:SF14	SMART:SM00997
SUPFAM:SSF143548	SUPFAM:SSF51735	SUPFAM:SSF52283	SUPFAM:SSF55021	TIGRFAMs:TIGR01327	UniParc:UPI000294B83C
RefSeq:XP_006356493.1	SEG:seg	:	:	:	:

Description

D-3-phosphoglycerate dehydrogenase [Source:PGSC_GENE;Acc:PGSC0003DMG400023264]

Coordinates

chr10:+:41239766..41243782

Molecular Weight (calculated)

62569.8 Da

IEP (calculated)

7.662

GRAVY (calculated)

0.174

Length

595 amino acids

Sequence
(BLAST)

001: MAASASSAIN LSIKPSHTSF SWKTHLSSTS ALAVSPISGH RQYPRFVIYA VGDKPTVLVA EKLGEAGVNL LKEFADVDCS YNLTPEELCN KISLCDALIV
101: RSGTKVSREV FESSGGRLKV VGRAGVGIDN VDLAAATEHG CLVVNAPTAN TVAAAEHGIA LLTAMARNVA QADASVKAGK WLRNKYVGVS LVGKTLAVMG
201: FGKVGSEVAR RAKGLGMHVI AHDPYAPADR ARAIGVELVS FDKAIASADF ISLHMPLTPA TNKVLNDETF AKMKKGVRIV NVARGGVIDE DALVRALDAG
301: IVAQAALDVF TVEPPKDSKL VQHENVTATP HLGASTMEAQ EGVAIEIAEA VVGALKGELA ATAVNAPMVP AEVLSELKPF VALAEKLGRL AVQLVAGGSG
401: VKSVKVTYGS ARGPDDLDTR LLRAMITKGL IEPISSSFVN LVNADFTAKQ RGLRIAELRS LLNGSPESPL EFIQVQISSV ESKFASALSD SGEIRVEGRV
501: KDGIPHLTKV GSFEVDVSLE GSIILCRQVD QPGMIGKVGS ILSEGNVNVS FMSVGRVAPR KHAVMAIGVD DQPSKEILKR IGEIPAVEEF VYLKI

Best Arabidopsis Sequence Match ( AT4G34200.1 )
(BLAST)

001: MSATAAASSS IAVATNSLRN VTLSSRSPLP SAISVAFPSR GRNTLQRRLV LVSCSTGDGS KPTILVAEKL GDAGIKLLED VANVDCSYNM TPEELNIKIS
101: LCDALIVRSG TKVGREVFES SHGRLKVVGR AGVGIDNVDL SAATEFGCLV VNAPTANTIA AAEHGIALMA AMARNVAQAD ASVKAGEWKR NKYVGVSLVG
201: KTLAVLGFGK VGTEVARRAK GLGMRVIAHD PYAPADRAHA IGVDLVSFDE ALATADFISL HMPLTPTTSK ILNDETFAKM KKGVRIVNVA RGGVIDEDAL
301: VRALDAGIVA QAALDVFTKE PPAKDSKLVQ HERVTVTPHL GASTMEAQEG VAIEIAEAVV GALNGELAAT AVNAPMVSAE VLTELKPYVV LAEKLGRLAV
401: QLVAGGSGVK NAKITYASAR ATDDLDTRLL RAMITKGIIE PISDVYVNLV NADFTAKQRG LRLSEERVLL DGSPESPLET ITVQLSNVES KFASSLSESG
501: EVKVEGKVKD GVPHLTKVGS FEVDVTLEGS IILCRQVDQP GMIGTVGSIL GESNVNVNFM SVGRIAPRKQ AIMAIGVDDI PSKETLKKIG EIPAVEEFVF
601: LKL

Arabidopsis Description

PGDH1D-3-phosphoglycerate dehydrogenase [Source:UniProtKB/TrEMBL;Acc:A0A178UWV4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.