Factsheet for PGSC0003DMT400058520

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 3
cytosol 2
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g080030.2.1	Tomato	cytosol	75.38	90.74
PGSC0003DMT400058518	Potato	cytosol	37.23	87.05
GSMUA_Achr4P17980_001	Banana	cytosol	19.38	58.88
HORVU2Hr1G005210.2	Barley	mitochondrion	48.31	56.68
Bra035498.1-P	Field mustard	cytosol	16.92	56.12
CDY17092	Canola	cytosol	18.15	55.66
GSMUA_Achr5P14420_001	Banana	cytosol	54.15	53.33
GSMUA_Achr5P14430_001	Banana	mitochondrion	48.62	51.97
TraesCS2D01G034700.1	Wheat	mitochondrion, plastid	52.92	51.5
CDY54697	Canola	mitochondrion	23.38	51.35
TraesCS2A01G035500.1	Wheat	extracellular, mitochondrion	52.62	51.2
HORVU4Hr1G086940.2	Barley	cytosol	20.31	51.16
Bra026966.1-P	Field mustard	cytosol	37.54	51.05
CDY26572	Canola	cytosol	37.85	51.04
TraesCS2A01G035400.1	Wheat	mitochondrion	51.69	50.91
Zm00001d024906_P001	Maize	cytosol	51.38	50.76
CDY57070	Canola	cytosol	49.85	50.31
TraesCS2D01G034600.1	Wheat	mitochondrion	50.77	50.0
EES10352	Sorghum	cytosol, mitochondrion	51.69	49.7
OQU81058	Sorghum	cytosol	51.08	49.55
EES11740	Sorghum	mitochondrion	50.15	49.39
Os04t0107500-01	Rice	plasma membrane	48.0	49.37
Zm00001d018790_P001	Maize	extracellular, plasma membrane	47.38	49.2
TraesCS2D01G034000.1	Wheat	cytosol, peroxisome, plastid	48.0	48.9
TraesCS2A01G034800.1	Wheat	cytosol, plasma membrane, plastid	47.38	48.73
TraesCS2B01G047900.1	Wheat	cytosol, peroxisome, plastid	47.38	48.73
CDX98054	Canola	cytosol	51.69	48.7
Bra019774.1-P	Field mustard	cytosol	51.69	48.7
HORVU2Hr1G005230.1	Barley	cytosol, mitochondrion	51.38	48.69
TraesCS2B01G048500.1	Wheat	cytosol	50.46	48.66
TraesCS2D01G030900.1	Wheat	cytosol	47.08	48.42
OQU81061	Sorghum	plastid	47.38	48.28
Os04t0106400-01	Rice	cytosol, mitochondrion, plastid	48.62	48.02
OQU88433	Sorghum	cytosol	47.38	47.98
TraesCS2A01G034900.1	Wheat	mitochondrion	47.69	47.84
Zm00001d024907_P001	Maize	mitochondrion	49.54	47.77
Os04t0107200-01	Rice	mitochondrion	48.31	47.72
CDY16011	Canola	cytosol, peroxisome, plastid	43.38	47.64
PGSC0003DMT400019586	Potato	extracellular	46.15	47.62
TraesCS2B01G048000.1	Wheat	mitochondrion	47.38	47.53
TraesCS2B01G048100.1	Wheat	plastid	50.15	47.38
EES10400	Sorghum	cytosol	49.23	47.34
EES11738	Sorghum	cytosol	48.62	46.75
Os04t0107300-01	Rice	mitochondrion, plasma membrane	46.77	46.63
TraesCS2D01G034100.1	Wheat	mitochondrion	46.46	46.6
Zm00001d004451_P001	Maize	cytosol	48.0	46.29
Zm00001d008883_P001	Maize	mitochondrion	46.77	46.06
TraesCSU01G226500.1	Wheat	extracellular, golgi, mitochondrion	45.54	45.82
TraesCS1B01G004500.1	Wheat	extracellular, golgi, mitochondrion	45.54	45.82
TraesCS2A01G028600.1	Wheat	extracellular, plasma membrane	47.08	45.67
HORVU2Hr1G005140.13	Barley	endoplasmic reticulum, extracellular, mitochondrion	50.15	45.66
TraesCS7B01G456600.1	Wheat	cytosol, plastid	48.31	45.64
TraesCS7A01G538500.1	Wheat	cytosol	48.31	45.64
Os11t0229100-01	Rice	extracellular	19.38	45.32
CDY26571	Canola	plastid	41.23	45.27
TraesCS2A01G035000.2	Wheat	mitochondrion, plastid	49.54	44.48
CDY16012	Canola	cytosol, nucleus, peroxisome	32.92	44.4
TraesCS2D01G034300.1	Wheat	plastid	48.92	43.92
PGSC0003DMT400019584	Potato	cytosol	41.23	42.81
Bra026967.1-P	Field mustard	cytosol, nucleus, plastid	42.77	35.01
HORVU2Hr1G005150.2	Barley	plastid	36.92	33.61
CDY16010	Canola	cytosol, nucleus, plastid	52.0	30.67
CDY26570	Canola	cytosol	39.08	28.22
PGSC0003DMT400085920	Potato	mitochondrion	13.85	24.46
PGSC0003DMT400071027	Potato	cytosol	20.62	21.75
PGSC0003DMT400015828	Potato	cytosol	24.31	20.47
PGSC0003DMT400001303	Potato	mitochondrion	20.0	17.06
PGSC0003DMT400046698	Potato	plastid	24.92	13.5
PGSC0003DMT400059818	Potato	plastid	24.0	13.11
PGSC0003DMT400023675	Potato	plastid	24.31	12.38
PGSC0003DMT400068907	Potato	cytosol	5.54	11.92

Protein Annotations

EntrezGene:102597677	Gene3D:3.40.50.720	MapMan:50.1.1	InterPro:D-isomer_2_OHA_DH_cat_dom	InterPro:D-isomer_DH_NAD-bd	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0008150	GO:GO:0008152	GO:GO:0016491
GO:GO:0016616	GO:GO:0051287	GO:GO:0055114	UniProt:M1C2T0	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00389
PFAM:PF02826	EnsemblPlantsGene:PGSC0003DMG400022730	PGSC:PGSC0003DMG400022730	EnsemblPlants:PGSC0003DMT400058520	PANTHER:PTHR10996	PANTHER:PTHR10996:SF179
SUPFAM:SSF51735	SUPFAM:SSF52283	UniParc:UPI000296CF24	RefSeq:XP_006358844.1	SEG:seg	:

Description

Glycerate dehydrogenase [Source:PGSC_GENE;Acc:PGSC0003DMG400022730]

Coordinates

chr8:+:53728314..53732460

Molecular Weight (calculated)

35543.8 Da

IEP (calculated)

7.205

GRAVY (calculated)

-0.006

Length

325 amino acids

Sequence
(BLAST)

001: MASSNQYQSP ETTNLRLLLV HRYPSYGNPF LSKLQTRYRV FDPLDESDPS LLPLSGSVRV MLCFGLTPVT SETLDKYPNL ECIVGTGAGY DHFDLAECRR
101: RGIRVTGAGD SFSEDAADFA VGLLIDVLRR VSAADRFVRA GSWPVKGIFP LGSKVGGKRV GIVGLGSIGS RIGKRLEAFG CSIAYTSKRM KPNVSFRFHS
201: NIHDLAINSD VLILCCALTK ETHHLVGKEV LTALGKEGIV INVGRGALID EEELVQFLKR GEIGGAGLDV YENEPHVPKE LFGLDNVVLS PHAAVITPES
301: FKALEELFTY NLEAFFSNKP LRAQI

Best Arabidopsis Sequence Match ( AT1G12550.1 )
(BLAST)

001: MAESSEPPVV LLHRPPSLTF MDEILTREFR TLITDTSSSE SLPSFFPRHA SSARAFVISG RLPVTDELLS HLPSLQILVC TSVGIDHIDL AACKRRGIVI
101: TNAGNAFSDD VADCAVGLLI SVLRRIPAAD RYVRSGNWAK FGDFQLGSKV SGKRVGIVGL GSIGSFVAKR LESFGCVISY NSRSQKQSSP YRYYSDILSL
201: AENNDVLVLC CSLTDETHHI VNREVMELLG KDGVVINVGR GKLIDEKEMV KCLVDGVIGG AGLDVFENEP AVPQELFGLD NVVLSPHFAV ATPGSLDNVA
301: QIALANLKAF FSNRPLLSPV QLD

Arabidopsis Description

HPR3Glyoxylate/hydroxypyruvate reductase HPR3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LE33]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.