CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 6
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d008883_P001	Maize	mitochondrion	84.24	84.24
Os04t0107200-01	Rice	mitochondrion	71.21	71.43
TraesCS2B01G048100.1	Wheat	plastid	70.61	67.73
EES10400	Sorghum	cytosol	67.27	65.68
EES10352	Sorghum	cytosol, mitochondrion	65.45	63.91
EES11738	Sorghum	cytosol	65.15	63.61
TraesCS2A01G035000.2	Wheat	mitochondrion, plastid	68.48	62.43
OQU81058	Sorghum	cytosol	62.73	61.79
TraesCS2D01G034300.1	Wheat	plastid	65.76	59.94
GSMUA_Achr5P14430_001	Banana	mitochondrion	52.42	56.91
GSMUA_Achr4P17980_001	Banana	cytosol	18.18	56.07
GSMUA_Achr5P14420_001	Banana	cytosol	54.85	54.85
OQU81061	Sorghum	plastid	52.73	54.55
OQU88433	Sorghum	cytosol	52.42	53.89
Solyc08g080030.2.1	Tomato	cytosol	43.64	53.33
Bra026966.1-P	Field mustard	cytosol	38.18	52.72
CDY26572	Canola	cytosol	38.18	52.28
CDY54697	Canola	mitochondrion	23.33	52.03
PGSC0003DMT400058518	Potato	cytosol	21.82	51.8
VIT_02s0025g04750.t01	Wine grape	cytosol, plasma membrane	45.15	51.38
CDY57070	Canola	cytosol	49.39	50.62
KXG31500	Sorghum	cytosol	48.18	50.48
PGSC0003DMT400058520	Potato	cytosol	49.39	50.15
AT2G45630.2	Thale cress	plastid	50.0	48.82
CDX98054	Canola	cytosol	50.0	47.83
Bra019774.1-P	Field mustard	cytosol	50.0	47.83
CDY16011	Canola	cytosol, peroxisome, plastid	42.42	47.3
Bra035498.1-P	Field mustard	cytosol	13.94	46.94
CDY16012	Canola	cytosol, nucleus, peroxisome	34.24	46.89
KRH48312	Soybean	cytosol	47.88	46.88
VIT_02s0025g04730.t01	Wine grape	cytosol	44.55	46.37
CDY17092	Canola	cytosol	14.85	46.23
Solyc01g093990.2.1	Tomato	cytosol	44.85	45.82
CDY26571	Canola	plastid	40.3	44.93
HORVU2Hr1G005150.2	Barley	plastid	46.67	43.14
KRH65202	Soybean	cytosol	29.39	43.11
KRH48313	Soybean	cytosol	43.64	42.86
KRH48311	Soybean	cytosol	43.33	42.81
KRH48310	Soybean	cytosol	41.21	40.72
KRH65201	Soybean	plastid	33.03	37.98
VIT_15s0048g01330.t01	Wine grape	mitochondrion, peroxisome, plastid	51.82	37.09
Bra026967.1-P	Field mustard	cytosol, nucleus, plastid	39.7	33.0
CDY16010	Canola	cytosol, nucleus, plastid	48.48	29.04
CDY26570	Canola	cytosol	36.06	26.44
EER89775	Sorghum	mitochondrion	24.24	21.28
KXG29243	Sorghum	cytosol	24.24	21.0
EES07384	Sorghum	mitochondrion	24.24	20.83
KXG34859	Sorghum	mitochondrion, plastid	23.94	20.57
EER96197	Sorghum	mitochondrion	23.03	19.74
EES12983	Sorghum	plastid	28.79	15.32
EER90146	Sorghum	mitochondrion, plastid	28.18	15.17
EES15079	Sorghum	plastid	27.58	14.7

Protein Annotations

Gene3D:3.40.50.720	MapMan:50.1.1	EntrezGene:8080246	UniProt:C5YBL2	InterPro:D-isomer_2_OHA_DH_cat_dom	InterPro:D-isomer_DH_CS1
InterPro:D-isomer_DH_NAD-bd	EnsemblPlants:EES11740	ProteinID:EES11740	ProteinID:EES11740.1	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005829	GO:GO:0008150	GO:GO:0008152	GO:GO:0016491	GO:GO:0016616	GO:GO:0016618
GO:GO:0030267	GO:GO:0051287	GO:GO:0055114	InterPro:NAD(P)-bd_dom_sf	ProteinID:OQU81059.1	ProteinID:OQU81060.1
PFAM:PF00389	PFAM:PF02826	ScanProsite:PS00065	PANTHER:PTHR10996	PANTHER:PTHR10996:SF207	EnsemblPlantsGene:SORBI_3006G005200
SUPFAM:SSF51735	SUPFAM:SSF52283	unigene:Sbi.1458	UniParc:UPI0001A8714D	RefSeq:XP_002447412.1	SEG:seg

Description

hypothetical protein

Coordinates

chr6:-:823348..826507

Molecular Weight (calculated)

34484.7 Da

IEP (calculated)

7.166

GRAVY (calculated)

0.306

Length

330 amino acids

Sequence
(BLAST)

001: MASAATRAAK PGLLLLRRTD ATFTAALRAR FRIHDFYASG APLPAFLTAA AAEADPPRAA LVLAGGAIQV DAAFLDAVPS LGCVVTTGAG VDHVDLAQCA
101: RRGVVVACAG EIFSVDVADH AVGLLIGVLR RVAAADRYVR AGLWPAQGNY PLTTKLSGKR VGIIGLGSIG SRIAKRLQAF GCAISYHSRA PKASVPYRYF
201: PDVHALAADS DALIVACALN DATRRIVGRR VLDALGPEGV LVNIARGGNV DEQELVLALQ DGRIAGAGLD VFQNEPHVPP ELGDMDNVVL TAHEAVFTEE
301: SAADLRELMI GNLEAFFSGK PLLTPVLSRP

Best Arabidopsis Sequence Match ( AT2G45630.2 )
(BLAST)

001: MQNRSISQVA TMATSSSTEK LPRVLIVKRP DAMAVLGDGF VASTKFEILK AFESPLPLPE FLAYHSDSIS AIIAPVAAPV TADLIRILPN LRLVVTTSAG
101: VDHVDLVECR RRGISVANAG SSFSEDVADT AVGLLIDVFR RISAANRFVK QRFWPLKGDY PLGSKLGRKR IGIVGLGSIG SKVATRLDAF GCQISYSSRN
201: RKPYDVPYHY YMDIEEMAAN SDALIICCEL NEKTLRLINK DVLSALGKRG VIVNVARGAI IDEEEMVRCL REGEIGGAGL DVFEDEPNVP KELFELDNVV
301: FSPHSAFMTL EGLEELGKVV VGNIEAFFSN KPLLTPVL

Arabidopsis Description

D-isomer specific 2-hydroxyacid dehydrogenase family protein [Source:UniProtKB/TrEMBL;Acc:Q67Y01]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.