CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 8
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d005489_P006	Maize	mitochondrion	90.65	89.26
KXG34859	Sorghum	mitochondrion, plastid	75.84	76.04
GSMUA_Achr3P21910_001	Banana	cytosol	63.64	71.85
VIT_18s0041g01830.t01	Wine grape	cytosol	56.36	63.27
Solyc11g020060.1.1	Tomato	cytosol	45.19	61.92
PGSC0003DMT400071027	Potato	cytosol	49.35	61.69
AT1G72190.1	Thale cress	mitochondrion	55.58	57.37
Bra003888.1-P	Field mustard	mitochondrion	54.55	56.45
CDX68275	Canola	mitochondrion	54.55	56.45
CDY50445	Canola	mitochondrion	54.55	56.3
KRH62463	Soybean	mitochondrion	56.36	55.5
PGSC0003DMT400085920	Potato	mitochondrion	26.23	54.89
Solyc03g044670.1.1	Tomato	cytosol	30.65	49.17
EES07384	Sorghum	mitochondrion	23.12	23.18
EES11740	Sorghum	mitochondrion	19.74	23.03
OQU81058	Sorghum	cytosol	20.0	22.99
EER89775	Sorghum	mitochondrion	22.34	22.87
OQU81061	Sorghum	plastid	18.7	22.57
OQU88433	Sorghum	cytosol	18.44	22.12
KXG31500	Sorghum	cytosol	17.92	21.9
EES11738	Sorghum	cytosol	18.7	21.3
EES10352	Sorghum	cytosol, mitochondrion	18.44	21.01
EES10400	Sorghum	cytosol	17.66	20.12
KXG29243	Sorghum	cytosol	18.44	18.64
EES12983	Sorghum	plastid	26.75	16.61
EER90146	Sorghum	mitochondrion, plastid	23.9	15.01
EES15079	Sorghum	plastid	23.12	14.38

Protein Annotations

Gene3D:3.40.50.720	MapMan:35.1	EntrezGene:8054471	UniProt:C5X3F4	InterPro:D-isomer_2_OHA_DH_cat_dom	InterPro:D-isomer_DH_CS
InterPro:D-isomer_DH_NAD-bd	EnsemblPlants:EER96197	ProteinID:EER96197	ProteinID:EER96197.1	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0008150	GO:GO:0008152	GO:GO:0016491	GO:GO:0016616
GO:GO:0051287	GO:GO:0055114	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00389	PFAM:PF02826	ScanProsite:PS00671
PANTHER:PTHR42938	PANTHER:PTHR42938:SF2	EnsemblPlantsGene:SORBI_3002G101300	SUPFAM:SSF51735	SUPFAM:SSF52283	unigene:Sbi.16596
UniParc:UPI0001A83AEF	RefSeq:XP_002459676.1	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr2:+:11454493..11459652

Molecular Weight (calculated)

42224.8 Da

IEP (calculated)

7.075

GRAVY (calculated)

-0.128

Length

385 amino acids

Sequence
(BLAST)

001: MAGGARLVGR LGRHSTFLLL HLPRHAAAHH HRLYSPSSSS SSSQGHYSKM GDSSEKNGHG TLTRVLFCGP YWPASTNYTK EYLQDYPFIQ VDEVGLEQVP
101: DVIDNYHICV VKNRRIDSDI IAKATQMKII MQYGVGLEGV DVNAATEHKI KVARIPGSTT GNAVSCAEMA IYLALGVLRK QKEMDTAVNR KDLGIPVGDT
201: LFGKTVLILG FGAIGVELAK RLRPFGVKIL ATKRNWSSDT MPSDVDELVD KKGGPEDMYE FAGEANIVIT CMTLTNETVG IVDHKFISSM KKGSYLVNIA
301: RGRLLDYKAV FDHLESGHLA GLGIDVAWME PFDPEDPVLK FPNVIITPHV AGVTEYSYRT MAKSVGDTAL QLHSGQPFTE VEFVN

Best Arabidopsis Sequence Match ( AT1G72190.1 )
(BLAST)

001: MTIMFKIAKA TLRSRNSSVA SLFYSIQARS ISRQSKVVKI ERIVEKEDMH VTRVLFCGPH FPDSYNFTRE YLQPYPFIKV DVVHYRDVPE VIKNYHICVA
101: MTMQMDSNVI SRASNIKLIM QYGVGLDGVD IDAATKHGIK VARIPSEGTG NAASCSEMAI YLMLGLLKKQ NEMQISLRNR LLGEPTGDTL LGKTVFILGY
201: GNIGIELAKR LKPFGSRVIA TKRFWPASIV DSDSRLVDEK GSHEDIYTFA GKADIVVVCL RLNKETAEIV NKEFICSMKK GALLVNIARG GLINYESAFQ
301: NLESGHLGGL GIDVAWSEPF DPNDPILKFK NVIITPHVAG VTEYSYRSMA KIVGDLALQL HEGLPLTGIE FVN

Arabidopsis Description

D-isomer specific 2-hydroxyacid dehydrogenase family protein [Source:UniProtKB/TrEMBL;Acc:F4IBQ3]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.