CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d002051_P001	Maize	plastid	96.94	96.01
Os04t0650800-01	Rice	plastid	92.26	93.31
HORVU2Hr1G113180.3	Barley	cytosol	67.58	92.49
TraesCS2A01G508900.1	Wheat	plastid	86.45	87.01
KRG91030	Soybean	endoplasmic reticulum	77.42	80.67
GSMUA_Achr4P11440_001	Banana	plastid	74.03	80.67
CDY57737	Canola	cytosol	22.1	80.12
Solyc03g112070.2.1	Tomato	plastid	77.1	79.67
PGSC0003DMT400059818	Potato	plastid	76.45	79.66
KRH35731	Soybean	nucleus	76.29	79.63
PGSC0003DMT400046698	Potato	plastid	76.77	79.33
Solyc10g049890.1.1	Tomato	plastid	75.97	79.16
VIT_18s0001g09890.t01	Wine grape	plastid	76.61	78.51
CDX82295	Canola	plastid	74.03	78.19
AT3G19480.1	Thale cress	plastid	74.03	78.06
CDY22972	Canola	plastid	73.87	78.02
GSMUA_Achr4P04100_001	Banana	plastid	72.9	77.93
CDX75409	Canola	plastid	74.52	77.52
Bra001747.1-P	Field mustard	plastid	73.39	77.51
CDX76268	Canola	plastid	74.68	77.17
Bra034616.1-P	Field mustard	plastid	74.52	76.87
CDY49286	Canola	plastid	74.03	76.76
CDX72462	Canola	plastid	74.03	76.76
Bra017637.1-P	Field mustard	plastid	74.03	76.76
AT4G34200.1	Thale cress	plastid	74.19	76.29
VIT_03s0180g00130.t01	Wine grape	cytosol	79.84	75.8
CDY57736	Canola	plastid	45.97	74.8
Bra011506.1-P	Field mustard	plastid	74.19	74.07
CDX69034	Canola	plastid	74.84	73.42
EES15079	Sorghum	plastid	71.13	71.24
EER90146	Sorghum	mitochondrion, plastid	69.84	70.64
OQU81061	Sorghum	plastid	15.0	29.15
EES11740	Sorghum	mitochondrion	15.32	28.79
OQU88433	Sorghum	cytosol	14.84	28.66
KXG31500	Sorghum	cytosol	14.52	28.57
EES10352	Sorghum	cytosol, mitochondrion	14.68	26.92
KXG29243	Sorghum	cytosol	16.45	26.77
EER96197	Sorghum	mitochondrion	16.61	26.75
EES10400	Sorghum	cytosol	14.19	26.04
EES11738	Sorghum	cytosol	14.19	26.04
KXG34859	Sorghum	mitochondrion, plastid	15.81	25.52
OQU81058	Sorghum	cytosol	13.23	24.48
EER89775	Sorghum	mitochondrion	13.71	22.61
EES07384	Sorghum	mitochondrion	13.39	21.61

Protein Annotations

KEGG:00260+1.1.1.95	KEGG:00270+3.3.1.1	KEGG:00680+1.1.1.95	Gene3D:3.30.1330.90	Gene3D:3.30.70.260	Gene3D:3.40.50.720
MapMan:4.1.4.1.1	InterPro:ACT_dom	InterPro:ASB_dom_sf	InterPro:Ado_hCys_hydrolase_NAD-bd	UniProt:C5Y949	InterPro:D-isomer_2_OHA_DH_cat_dom
InterPro:D-isomer_DH_CS	InterPro:D-isomer_DH_CS1	InterPro:D-isomer_DH_NAD-bd	EnsemblPlants:EES12983	ProteinID:EES12983	ProteinID:EES12983.2
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004617	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0006564	GO:GO:0008150
GO:GO:0008152	GO:GO:0008652	GO:GO:0009058	GO:GO:0009536	GO:GO:0009570	GO:GO:0009987
GO:GO:0016491	GO:GO:0016616	GO:GO:0051287	GO:GO:0055114	InterPro:IPR002912	InterPro:IPR029009
InterPro:NAD(P)-bd_dom_sf	PFAM:PF00389	PFAM:PF01842	PFAM:PF02826	InterPro:PGDH	ScanProsite:PS00065
ScanProsite:PS00671	PFscan:PS51671	PANTHER:PTHR42938	PANTHER:PTHR42938:SF14	MetaCyc:PWY-5041	SMART:SM00997
EnsemblPlantsGene:SORBI_3006G243400	SUPFAM:SSF143548	SUPFAM:SSF51735	SUPFAM:SSF52283	SUPFAM:SSF55021	TIGRFAMs:TIGR01327
UniParc:UPI00081AD291	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr6:+:58360791..58364156

Molecular Weight (calculated)

64351.0 Da

IEP (calculated)

7.006

GRAVY (calculated)

0.200

Length

620 amino acids

Sequence
(BLAST)

001: MAAPSQTTAA ATTHHRALLP SPRGTRAAAA PSAVRLPLRA QPHAHAQRAR LSAPVAAAAP AASTASPESP AAGAVAGKPT VLVAEKLGAA GLALLREFAN
101: VDCSYGLSPE DLRAKISLCD ALIVRSGTKV GRDVFEASGG RLRVVGRAGV GIDNVDLAAA TEHGCLVVNA PTANTVAAAE HGIALLTAMA RNIAQADASL
201: KAGQWQRNKY VGVSLVGKTL AILGFGKVGS EVARRAKGLG MHVIAHDPYA SADRARAIGV ELVSMEEAMT TADFISLHMP LTPATNKMLN DEAFAKMKKG
301: VRIINVARGG VIDEEALVRA LDSGIVAQAA LDVFTKEPPA PDNKLVLHEN VTVTPHLGAS TVEAQEGVAI EIAEAVIGAL KGELAASAVN APMVPAEVLS
401: ELAPFVVLAE KLGRLAVQLV AGGGGIKSVK VTYASARAPD DLDTRLLRAM ITKGLIEPIS SVFVNLVNAD FTAKQRGVRI TEERILLDGS PETPIDYIQV
501: QIANVESKFP SAISESGEIT VEGRVKDGVP HLTKVGAFQV DVSLEGSLIL CRQVDQPGMI GSVGSVLGEE NVNVSFMSVG RIAPRKHAVM AIGVDEEPSK
601: ATLTKIGEIP AIEEFVFLKL

Best Arabidopsis Sequence Match ( AT4G34200.1 )
(BLAST)

001: MSATAAASSS IAVATNSLRN VTLSSRSPLP SAISVAFPSR GRNTLQRRLV LVSCSTGDGS KPTILVAEKL GDAGIKLLED VANVDCSYNM TPEELNIKIS
101: LCDALIVRSG TKVGREVFES SHGRLKVVGR AGVGIDNVDL SAATEFGCLV VNAPTANTIA AAEHGIALMA AMARNVAQAD ASVKAGEWKR NKYVGVSLVG
201: KTLAVLGFGK VGTEVARRAK GLGMRVIAHD PYAPADRAHA IGVDLVSFDE ALATADFISL HMPLTPTTSK ILNDETFAKM KKGVRIVNVA RGGVIDEDAL
301: VRALDAGIVA QAALDVFTKE PPAKDSKLVQ HERVTVTPHL GASTMEAQEG VAIEIAEAVV GALNGELAAT AVNAPMVSAE VLTELKPYVV LAEKLGRLAV
401: QLVAGGSGVK NAKITYASAR ATDDLDTRLL RAMITKGIIE PISDVYVNLV NADFTAKQRG LRLSEERVLL DGSPESPLET ITVQLSNVES KFASSLSESG
501: EVKVEGKVKD GVPHLTKVGS FEVDVTLEGS IILCRQVDQP GMIGTVGSIL GESNVNVNFM SVGRIAPRKQ AIMAIGVDDI PSKETLKKIG EIPAVEEFVF
601: LKL

Arabidopsis Description

PGDH1D-3-phosphoglycerate dehydrogenase [Source:UniProtKB/TrEMBL;Acc:A0A178UWV4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.