CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX75409	Canola	plastid	93.83	99.5
CDY12275	Canola	cytosol	53.32	98.54
CDY57737	Canola	cytosol	26.58	98.25
Bra011506.1-P	Field mustard	plastid	95.73	97.42
CDY49286	Canola	plastid	90.66	95.82
CDX72462	Canola	plastid	90.51	95.65
CDX76268	Canola	plastid	90.35	95.17
CDY57736	Canola	plastid	54.75	90.81
HORVU2Hr1G113180.3	Barley	cytosol	59.65	83.22
KRH35731	Soybean	nucleus	77.06	81.99
Solyc10g049890.1.1	Tomato	plastid	76.9	81.68
PGSC0003DMT400059818	Potato	plastid	76.9	81.68
KRG91030	Soybean	endoplasmic reticulum	76.58	81.34
CDY22972	Canola	plastid	72.47	78.02
CDX82295	Canola	plastid	72.31	77.85
GSMUA_Achr4P11440_001	Banana	plastid	67.56	75.04
Os04t0650800-01	Rice	plastid	72.78	75.04
EES12983	Sorghum	plastid	73.42	74.84
Zm00001d026472_P001	Maize	plastid	72.47	74.84
VIT_03s0180g00130.t01	Wine grape	cytosol	77.06	74.58
TraesCS2A01G508900.1	Wheat	plastid	72.31	74.19
Zm00001d002051_P001	Maize	plastid	72.63	73.32
GSMUA_Achr4P04100_001	Banana	plastid	67.25	73.28
CDX83893	Canola	plastid	68.35	69.45
CDX96754	Canola	plastid	68.2	69.4
CDY17092	Canola	cytosol	4.91	29.25
CDY54697	Canola	mitochondrion	6.33	27.03
CDX87280	Canola	cytosol	12.66	25.81
CDY58781	Canola	cytosol	12.66	25.56
CDY07405	Canola	cytosol	15.51	25.39
CDY57070	Canola	cytosol	12.82	25.16
CDX68275	Canola	mitochondrion	14.72	25.0
CDY50445	Canola	mitochondrion	14.72	24.93
CDY16011	Canola	cytosol, peroxisome, plastid	11.55	24.66
CDY04198	Canola	cytosol	15.35	24.62
CDX85582	Canola	mitochondrion	14.56	24.02
CDX67931	Canola	cytosol	11.87	23.96
CDX79406	Canola	cytosol	11.87	23.96
CDY09885	Canola	mitochondrion	14.24	23.5
CDX98054	Canola	cytosol	12.82	23.48
CDX69558	Canola	mitochondrion	14.24	23.44
CDX91020	Canola	mitochondrion	14.08	23.18
CDY26572	Canola	cytosol	8.54	22.41
CDX96054	Canola	mitochondrion	15.82	21.83
CDY16012	Canola	cytosol, nucleus, peroxisome	8.07	21.16
CDY26571	Canola	plastid	9.81	20.95
CDY16010	Canola	cytosol, nucleus, plastid	13.13	15.06
CDY01876	Canola	endoplasmic reticulum, plasma membrane	15.82	14.43
CDY26570	Canola	cytosol	9.97	14.0

Protein Annotations

KEGG:00260+1.1.1.95	KEGG:00270+3.3.1.1	KEGG:00680+1.1.1.95	Gene3D:3.30.1330.90	Gene3D:3.30.70.260	Gene3D:3.40.50.720
MapMan:4.1.4.1.1	GO:A0A078BYP8	InterPro:ACT_dom	InterPro:ASB_dom_sf	InterPro:Ado_hCys_hydrolase_NAD-bd	EnsemblPlants:CDX69034
ProteinID:CDX69034	ProteinID:CDX69034.1	InterPro:D-isomer_2_OHA_DH_cat_dom	InterPro:D-isomer_DH_CS	InterPro:D-isomer_DH_CS1	InterPro:D-isomer_DH_NAD-bd
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004617	GO:GO:0005488	GO:GO:0006564
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016616	GO:GO:0051287
GO:GO:0055114	EnsemblPlantsGene:GSBRNA2T00130790001	InterPro:IPR002912	InterPro:IPR029009	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00389
PFAM:PF01842	PFAM:PF02826	InterPro:PGDH	ScanProsite:PS00065	ScanProsite:PS00670	ScanProsite:PS00671
PFscan:PS51671	PANTHER:PTHR42938	PANTHER:PTHR42938:SF14	MetaCyc:PWY-5041	SMART:SM00997	SUPFAM:SSF143548
SUPFAM:SSF51735	SUPFAM:SSF52283	SUPFAM:SSF55021	TIGRFAMs:TIGR01327	UniPathway:UPA00135	UniPathway:UPA00314
UniParc:UPI0004EED829	SEG:seg	:	:	:	:

Description

BnaC01g04190D

Coordinates

chrLK031789:-:2564827..2568958

Molecular Weight (calculated)

66882.3 Da

IEP (calculated)

6.725

GRAVY (calculated)

0.160

Length

632 amino acids

Sequence
(BLAST)

001: MSATASSAIS VATKPLKSLS LSSRSPLPSA ASVAFPTPRR RLVLVACTAG DGSKPTILVA EKLGEAGVKL LEDFANVDCS YNLTPEELNT KISLCDALIV
101: RSGTKVGREV FESSRGRLKV VGRAGVGIDN VDLSAATEFG CLVVNAPTAN TIAAAEHGIA LLAGMARNVA QADASVKAGE WKRNKYVGVS LVGKTLAVMG
201: FGKVGTEVAR RAKGLGMRVI AHDPYAPADR AHAIGVDLVS FDEALATADF ISLHMPLTPA TSKILNDETF AKMKKGVRIV NVARGGVIDE DALVRALDAG
301: IVAQAALDVF TKEPPAKDSP LVQHERVTVT PHLGASTMEA QEGVAIEIAE AVVGALNGEL AATAVNAPMV SAEVLTELKP YVILAEKLGR LAVQLVAGGS
401: GVKNVKVSYT SARATDDLDT RLLRAMITKG IIEPISDVYV NLVNADFTAK QRGLRISEER VLLDGSPENP LETITVQLGN VESKFASSLS ESGEVKVEGR
501: VKDGVPHLTK VGSFEVDVTL EGSIILCRQV DQPGMIGTVG SILGESNVNV NFMSVGRIAP RKQAIMAIGV DDQPSKETLK KIGEIPAVEE FVFLKLLRNI
601: LIAEIMVEII PNLVRKELIL HPKCSNRYFC DY

Best Arabidopsis Sequence Match ( AT4G34200.1 )
(BLAST)

001: MSATAAASSS IAVATNSLRN VTLSSRSPLP SAISVAFPSR GRNTLQRRLV LVSCSTGDGS KPTILVAEKL GDAGIKLLED VANVDCSYNM TPEELNIKIS
101: LCDALIVRSG TKVGREVFES SHGRLKVVGR AGVGIDNVDL SAATEFGCLV VNAPTANTIA AAEHGIALMA AMARNVAQAD ASVKAGEWKR NKYVGVSLVG
201: KTLAVLGFGK VGTEVARRAK GLGMRVIAHD PYAPADRAHA IGVDLVSFDE ALATADFISL HMPLTPTTSK ILNDETFAKM KKGVRIVNVA RGGVIDEDAL
301: VRALDAGIVA QAALDVFTKE PPAKDSKLVQ HERVTVTPHL GASTMEAQEG VAIEIAEAVV GALNGELAAT AVNAPMVSAE VLTELKPYVV LAEKLGRLAV
401: QLVAGGSGVK NAKITYASAR ATDDLDTRLL RAMITKGIIE PISDVYVNLV NADFTAKQRG LRLSEERVLL DGSPESPLET ITVQLSNVES KFASSLSESG
501: EVKVEGKVKD GVPHLTKVGS FEVDVTLEGS IILCRQVDQP GMIGTVGSIL GESNVNVNFM SVGRIAPRKQ AIMAIGVDDI PSKETLKKIG EIPAVEEFVF
601: LKL

Arabidopsis Description

PGDH1D-3-phosphoglycerate dehydrogenase [Source:UniProtKB/TrEMBL;Acc:A0A178UWV4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.