CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra001747.1-P	Field mustard	plastid	99.15	99.15
CDY22972	Canola	plastid	98.98	98.98
AT3G19480.1	Thale cress	plastid	93.87	93.71
CDY12275	Canola	cytosol	46.85	80.41
KRH35731	Soybean	nucleus	81.09	80.13
HORVU2Hr1G113180.3	Barley	cytosol	61.84	80.13
KRG91030	Soybean	endoplasmic reticulum	80.75	79.66
CDY57737	Canola	cytosol	22.49	77.19
CDX72462	Canola	plastid	78.19	76.76
CDY49286	Canola	plastid	78.19	76.76
PGSC0003DMT400059818	Potato	plastid	77.68	76.64
Solyc10g049890.1.1	Tomato	plastid	77.51	76.47
CDX75409	Canola	plastid	77.51	76.34
CDX76268	Canola	plastid	76.83	75.17
Zm00001d026472_P001	Maize	plastid	77.68	74.51
EES12983	Sorghum	plastid	78.19	74.03
Os04t0650800-01	Rice	plastid	77.17	73.9
CDY57736	Canola	plastid	47.87	73.75
GSMUA_Achr4P11440_001	Banana	plastid	71.38	73.64
Zm00001d002051_P001	Maize	plastid	78.02	73.16
VIT_03s0180g00130.t01	Wine grape	cytosol	80.58	72.43
CDX69034	Canola	plastid	77.85	72.31
GSMUA_Achr4P04100_001	Banana	plastid	71.38	72.24
TraesCS2A01G508900.1	Wheat	plastid	75.3	71.75
CDX96754	Canola	plastid	70.7	66.83
CDX83893	Canola	plastid	70.7	66.72
CDY07405	Canola	cytosol	17.55	26.68
CDY17092	Canola	cytosol	4.77	26.42
CDY04198	Canola	cytosol	17.38	25.89
CDX87280	Canola	cytosol	12.95	24.52
CDY57070	Canola	cytosol	13.29	24.22
CDY58781	Canola	cytosol	12.78	23.96
CDX68275	Canola	mitochondrion	14.99	23.66
CDY16011	Canola	cytosol, peroxisome, plastid	11.93	23.65
CDY50445	Canola	mitochondrion	14.99	23.59
CDX67931	Canola	cytosol	12.27	23.0
CDX79406	Canola	cytosol	12.27	23.0
CDY54697	Canola	mitochondrion	5.79	22.97
CDX96054	Canola	mitochondrion	17.72	22.71
CDX98054	Canola	cytosol	13.29	22.61
CDY26572	Canola	cytosol	9.03	21.99
CDY26571	Canola	plastid	10.73	21.28
CDX85582	Canola	mitochondrion	13.8	21.15
CDY16012	Canola	cytosol, nucleus, peroxisome	8.52	20.75
CDY09885	Canola	mitochondrion	13.29	20.37
CDX69558	Canola	mitochondrion	13.29	20.31
CDX91020	Canola	mitochondrion	13.29	20.31
CDY16010	Canola	cytosol, nucleus, plastid	14.14	15.06
CDY01876	Canola	endoplasmic reticulum, plasma membrane	17.72	15.01
CDY26570	Canola	cytosol	10.39	13.56

Protein Annotations

KEGG:00260+1.1.1.95	KEGG:00270+3.3.1.1	KEGG:00680+1.1.1.95	Gene3D:3.30.1330.90	Gene3D:3.30.70.260	Gene3D:3.40.50.720
MapMan:4.1.4.1.1	GO:A0A078CZL5	InterPro:ACT_dom	InterPro:ASB_dom_sf	InterPro:Ado_hCys_hydrolase_NAD-bd	EnsemblPlants:CDX82295
ProteinID:CDX82295	ProteinID:CDX82295.1	InterPro:D-isomer_2_OHA_DH_cat_dom	InterPro:D-isomer_DH_CS	InterPro:D-isomer_DH_CS1	InterPro:D-isomer_DH_NAD-bd
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004617	GO:GO:0005488	GO:GO:0006564
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016616	GO:GO:0051287
GO:GO:0055114	EnsemblPlantsGene:GSBRNA2T00137402001	InterPro:IPR002912	InterPro:IPR029009	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00389
PFAM:PF01842	PFAM:PF02826	InterPro:PGDH	ScanProsite:PS00065	ScanProsite:PS00670	ScanProsite:PS00671
PFscan:PS51671	PANTHER:PTHR42938	PANTHER:PTHR42938:SF14	MetaCyc:PWY-5041	SMART:SM00997	SUPFAM:SSF143548
SUPFAM:SSF51735	SUPFAM:SSF52283	SUPFAM:SSF55021	TIGRFAMs:TIGR01327	UniPathway:UPA00135	UniPathway:UPA00314
UniParc:UPI0004EF3688	SEG:seg	:	:	:	:

Description

BnaA03g35260D

Coordinates

chrLK031828:+:445896..448205

Molecular Weight (calculated)

62150.8 Da

IEP (calculated)

7.915

GRAVY (calculated)

0.204

Length

587 amino acids

Sequence
(BLAST)

001: MATPLGLSSL FSSRLYTTTP SVFPIHRKEF NRRRIILVTA GGGGKPTILV AEKLGQAGID LLKKHANVDC SYDLSVEELC TKISLCDALI VRSGTKVGRD
101: VFESSRGRLK VVGRAGVGID NVDLAAATEY GCLVVNAPTA NTVAAAEHGI ALLTAMARNV AQADASIKAG KWMRSKYVGV SLVGKTLAVL GFGKVGSEVA
201: RRARGLGMHV ITHDPYAPAD RARAIGVELV SFEVAISTAD FISLHLPLTA ATSKMLNDET FARMKRGVRI VNVARGGVID EEALLRALDS GIVAQAALDV
301: FTVEPPVKDN KLVLHESVTA TPHLGASTME AQEGVAVEIA EAVVGALRGE LAATAVNAPM VPPEVLRELK PYVVLAEKLG RLAVQLVTGG SGVDAVKVTY
401: ASSRSPDDLD TRLLRAMVIK GLIEPISSVF INLVNSDYVA KQRGVKISEE RMVLDGSPED PIEYITVRIA NVESRFASAL SESGEIKVEG RVKQGVPSLT
501: KVGLFGVDVS LEGSVILCRQ VDQPGMIGKV GSILGDENVN VSFMSVGRIA PGKQAVMAIG VDEQPSKETL KKIGDISAIE EFVFLKL

Best Arabidopsis Sequence Match ( AT3G19480.1 )
(BLAST)

001: MATSLNLSSI FSSSSRLVTT PSSVFPIRQR RRIILVTSSS SGGGGKPTIL VTEKLGQAGI DLLKKYANVD CSYDLSLEEL CTKISLCDAL IVRSGTKVGR
101: DVFESSRGRL KVVGRAGVGI DNVDLAAATE YGCLVVNAPT ANTVAAAEHG IALLTAMARN IAQADASIKA GKWTRNKYVG VSLVGKTLAV LGFGKVGSEV
201: ARRARGLGMH VITHDPYAPA DRARAIGVEL VSFEVAISTA DFISLHLPLT AATSKMMNDV TFAMMKKGVR IVNVARGGVI DEEALLRALD SGIVAQAALD
301: VFTVEPPVKD NKLVLHESVT ATPHLGASTM EAQEGVSIEV AEAVIGALRG ELAATAVNAP MVPLEVLREL KPYVVLAEKL GRLAVQLVTG GSGVNAVKVT
401: YASSRAPDDL DTRLLRAMVI KGIIEPISSV FINLVNSDYI AKQRGVKISE ERMVLDGSPE NPIEYITVRI ANVESRFASA LSESGEIKVE GRVKQGVPSL
501: TKVGLFGVDV SLEGSVILCR QVDQPGMIGK VASILGDENV NVSFMSVGRI APGKQAVMAI GVDEQPSKET LKKIGDIPAI EEFVFLKL

Arabidopsis Description

PGDH3D-3-phosphoglycerate dehydrogenase 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LT69]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.