Factsheet for GSMUA_Achr4P04100_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P11440_001	Banana	plastid	87.59	89.28
HORVU2Hr1G113180.3	Barley	cytosol	60.52	77.48
KRG91030	Soybean	endoplasmic reticulum	76.72	74.79
KRH35731	Soybean	nucleus	76.38	74.58
Os04t0650800-01	Rice	plastid	77.41	73.25
EES12983	Sorghum	plastid	77.93	72.9
Zm00001d026472_P001	Maize	plastid	76.9	72.88
PGSC0003DMT400059818	Potato	plastid	74.48	72.61
Solyc10g049890.1.1	Tomato	plastid	74.31	72.44
Zm00001d002051_P001	Maize	plastid	78.1	72.36
Solyc03g112070.2.1	Tomato	plastid	74.14	71.67
CDY49286	Canola	plastid	73.62	71.4
CDX72462	Canola	plastid	73.62	71.4
Bra017637.1-P	Field mustard	plastid	73.62	71.4
CDY57736	Canola	plastid	46.9	71.39
CDX82295	Canola	plastid	72.24	71.38
PGSC0003DMT400046698	Potato	plastid	73.79	71.33
CDX75409	Canola	plastid	73.28	71.31
TraesCS2A01G508900.1	Wheat	plastid	75.69	71.27
VIT_18s0001g09890.t01	Wine grape	plastid	74.31	71.24
CDY22972	Canola	plastid	71.9	71.04
AT3G19480.1	Thale cress	plastid	71.9	70.92
CDX76268	Canola	plastid	73.28	70.83
Bra001747.1-P	Field mustard	plastid	71.55	70.7
AT4G34200.1	Thale cress	plastid	73.45	70.65
Bra034616.1-P	Field mustard	plastid	73.1	70.55
GSMUA_Achr9P22790_001	Banana	plastid	62.24	68.76
GSMUA_Achr10P...	Banana	plastid	72.59	68.34
Bra011506.1-P	Field mustard	plastid	72.93	68.12
VIT_03s0180g00130.t01	Wine grape	cytosol	76.38	67.84
GSMUA_Achr3P27990_001	Banana	plastid	71.55	67.48
CDX69034	Canola	plastid	73.28	67.25
CDY57737	Canola	cytosol	18.62	63.16
GSMUA_Achr4P17980_001	Banana	cytosol	6.21	33.64
GSMUA_Achr5P18940_001	Banana	cytosol	7.76	28.66
GSMUA_Achr3P31530_001	Banana	cytosol	15.17	27.85
GSMUA_Achr5P14420_001	Banana	cytosol	15.69	27.58
GSMUA_Achr5P14430_001	Banana	mitochondrion	13.79	26.32
GSMUA_Achr3P03420_001	Banana	cytosol	14.14	25.95
GSMUA_Achr3P21910_001	Banana	cytosol	15.17	25.81
GSMUA_Achr5P18950_001	Banana	cytosol	8.97	23.11
GSMUA_Achr3P01200_001	Banana	mitochondrion	13.28	20.1

Protein Annotations

KEGG:00260+1.1.1.95	KEGG:00270+3.3.1.1	KEGG:00680+1.1.1.95	Gene3D:3.30.1330.90	Gene3D:3.30.70.260	Gene3D:3.40.50.720
MapMan:4.1.4.1.1	InterPro:ACT_dom	InterPro:ASB_dom_sf	InterPro:Ado_hCys_hydrolase_NAD-bd	InterPro:D-isomer_2_OHA_DH_cat_dom	InterPro:D-isomer_DH_CS
InterPro:D-isomer_DH_CS1	InterPro:D-isomer_DH_NAD-bd	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004617
GO:GO:0005488	GO:GO:0006564	GO:GO:0008150	GO:GO:0008152	GO:GO:0008652	GO:GO:0009058
GO:GO:0009987	GO:GO:0016491	GO:GO:0016616	GO:GO:0051287	GO:GO:0055114	EnsemblPlantsGene:GSMUA_Achr4G04100_001
EnsemblPlants:GSMUA_Achr4P04100_001	EnsemblPlants:GSMUA_Achr4T04100_001	InterPro:IPR002912	InterPro:IPR029009	UniProt:M0SKX7	InterPro:NAD(P)-bd_dom_sf
PFAM:PF00389	PFAM:PF01842	PFAM:PF02826	InterPro:PGDH	ScanProsite:PS00065	ScanProsite:PS00670
ScanProsite:PS00671	PFscan:PS51671	PANTHER:PTHR42938	PANTHER:PTHR42938:SF14	SMART:SM00997	SUPFAM:SSF143548
SUPFAM:SSF51735	SUPFAM:SSF52283	SUPFAM:SSF55021	TIGRFAMs:TIGR01327	UniParc:UPI0002954A70	SEG:seg

Description

D-3-phosphoglycerate dehydrogenase, chloroplastic [Source:GMGC_GENE;Acc:GSMUA_Achr4G04100_001]

Coordinates

chr4:-:3290566..3295392

Molecular Weight (calculated)

60981.4 Da

IEP (calculated)

8.050

GRAVY (calculated)

0.196

Length

580 amino acids

Sequence
(BLAST)

001: MAATLAPADR LAAPSLRIHH PSSLSRRLLV PSRLPATSLF PHRRPRVVAM AVETGGANSK PRVLVAEKLG EAGLALLKGL ADVDCSYNLS PEELRAKIAL
101: CDALIVRSGT KVGRDVFESS GGKLRVVGRA GVGIDNVDLA AATEHGCLVV NAPTANTVAA AEHGIALLTA MARNIARSDA SMKAGKWERN KYVGVSLVGK
201: ILAILGFGKV GSEVARRAKG LGMHVIAHDP YAAADRAHAM GVELVTFDEA IASADFISLH MPLTPSTSKI LNYEAFAKMK KGVRVINVAR GGVIDEEALV
301: KALDSGVVAQ AALDVFTKEP PSADSKLVLH EKVIATPHLG ASTVEAQEEV AIEIAEAVIG ALKGELAATA VNAPMVPPEV LTELAPFVVL AEKLGRLAVQ
401: LVAGGSGVKS VKVTYASART SVDLDTRLLR AMITKGLIEP ISDVHINLVN ADYTAKKRGI RITEERIPLD GSPEDPIESI QVHIANAESK FPTAIGSFQV
501: DASMEGSLIL CRQVDQPGMI GTVGSILGEQ NVNVSYMSVG RIAPRKHAVM AIGVDDEPTK AALKKIGDIP AVEEFVFLKL

Best Arabidopsis Sequence Match ( AT4G34200.1 )
(BLAST)

001: MSATAAASSS IAVATNSLRN VTLSSRSPLP SAISVAFPSR GRNTLQRRLV LVSCSTGDGS KPTILVAEKL GDAGIKLLED VANVDCSYNM TPEELNIKIS
101: LCDALIVRSG TKVGREVFES SHGRLKVVGR AGVGIDNVDL SAATEFGCLV VNAPTANTIA AAEHGIALMA AMARNVAQAD ASVKAGEWKR NKYVGVSLVG
201: KTLAVLGFGK VGTEVARRAK GLGMRVIAHD PYAPADRAHA IGVDLVSFDE ALATADFISL HMPLTPTTSK ILNDETFAKM KKGVRIVNVA RGGVIDEDAL
301: VRALDAGIVA QAALDVFTKE PPAKDSKLVQ HERVTVTPHL GASTMEAQEG VAIEIAEAVV GALNGELAAT AVNAPMVSAE VLTELKPYVV LAEKLGRLAV
401: QLVAGGSGVK NAKITYASAR ATDDLDTRLL RAMITKGIIE PISDVYVNLV NADFTAKQRG LRLSEERVLL DGSPESPLET ITVQLSNVES KFASSLSESG
501: EVKVEGKVKD GVPHLTKVGS FEVDVTLEGS IILCRQVDQP GMIGTVGSIL GESNVNVNFM SVGRIAPRKQ AIMAIGVDDI PSKETLKKIG EIPAVEEFVF
601: LKL

Arabidopsis Description

PGDH1D-3-phosphoglycerate dehydrogenase [Source:UniProtKB/TrEMBL;Acc:A0A178UWV4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.