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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 1
  • plastid 3
  • cytosol 2
  • mitochondrion 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY12275 Canola cytosol 97.08 48.54
HORVU2Hr1G113180.3 Barley cytosol 80.7 30.46
CDX76268 Canola plastid 100.0 28.5
Bra034616.1-P Field mustard plastid 100.0 28.45
CDX75409 Canola plastid 97.66 28.02
CDY49286 Canola plastid 97.08 27.76
CDX72462 Canola plastid 97.08 27.76
CDX69034 Canola plastid 98.25 26.58
KRG91030 Soybean endoplasmic reticulum 83.63 24.03
KRH35731 Soybean nucleus 83.04 23.91
PGSC0003DMT400059818 Potato plastid 81.29 23.36
Solyc10g049890.1.1 Tomato plastid 80.7 23.19
CDY22972 Canola plastid 77.19 22.49
CDX82295 Canola plastid 77.19 22.49
TraesCS2A01G508900.1 Wheat plastid 80.7 22.4
EES12983 Sorghum plastid 80.12 22.1
VIT_03s0180g00130.t01 Wine grape cytosol 84.21 22.05
Os04t0650800-01 Rice plastid 78.95 22.02
Zm00001d026472_P001 Maize plastid 77.78 21.73
Zm00001d002051_P001 Maize plastid 79.53 21.73
GSMUA_Achr4P11440_001 Banana plastid 69.59 20.91
CDX83893 Canola plastid 71.34 19.61
CDX96754 Canola plastid 70.76 19.48
GSMUA_Achr4P04100_001 Banana plastid 63.16 18.62
CDY17092 Canola cytosol 2.34 3.77
CDY54697 Canola mitochondrion 2.34 2.7
CDY07405 Canola cytosol 5.85 2.59
CDX96054 Canola mitochondrion 6.43 2.4
CDY04198 Canola cytosol 5.26 2.28
CDX87280 Canola cytosol 2.92 1.61
CDX67931 Canola cytosol 2.92 1.6
CDY58781 Canola cytosol 2.92 1.6
CDX79406 Canola cytosol 2.92 1.6
CDY01876 Canola endoplasmic reticulum, plasma membrane 6.43 1.59
CDY26571 Canola plastid 2.34 1.35
CDY16011 Canola cytosol, peroxisome, plastid 2.34 1.35
CDX68275 Canola mitochondrion 2.34 1.08
CDY50445 Canola mitochondrion 2.34 1.07
CDY09885 Canola mitochondrion 2.34 1.04
CDX69558 Canola mitochondrion 2.34 1.04
CDY57070 Canola cytosol 1.75 0.93
CDX98054 Canola cytosol 1.75 0.87
CDY57736 Canola plastid 1.75 0.79
CDX85582 Canola mitochondrion 1.75 0.78
CDY26570 Canola cytosol 1.75 0.67
CDY16010 Canola cytosol, nucleus, plastid 1.75 0.54
CDX91020 Canola mitochondrion 1.17 0.52
CDY16012 Canola cytosol, nucleus, peroxisome 0.58 0.41
CDY26572 Canola cytosol 0.0 0.0
Protein Annotations
EnsemblPlants:CDY57737EnsemblPlantsGene:GSBRNA2T00022585001Gene3D:3.30.1330.90Gene3D:3.30.70.260GO:A0A078J2I9InterPro:ACT_dom
InterPro:ASB_dom_sfInterPro:IPR002912InterPro:IPR029009PANTHER:PTHR42938PANTHER:PTHR42938:SF14PFAM:PF01842
PFscan:PS51671ProteinID:CDY57737ProteinID:CDY57737.1SUPFAM:SSF143548SUPFAM:SSF55021UniParc:UPI000254657A
UniProt:A0A078J2I9MapMan:4.1.4.1.1::::
Description
BnaC03g77040DBnaC03g77040D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J2I9]
Coordinates
chrLK033600:+:9485..10251
Molecular Weight (calculated)
18494.4 Da
IEP (calculated)
4.627
GRAVY (calculated)
0.023
Length
171 amino acids
Sequence
(BLAST)
001: MITKGIIEPI SDVYVNLVNA DFTAKQRGLR LSEERVLLDG SPENPLETIT VQLGNVESKF ASSLSESGEV KVEGRVKDGI PHLTKVGSFE VDVTLEGSII
101: LCRQVDQPGM IGTVGSILGE SNVNVNFMSV GRIAPRKQAI MAIGVDDQPS KETLKKIGEI PAIEEFVFLK L
Best Arabidopsis Sequence Match ( AT1G17745.1 )
(BLAST)
001: MAFSSSCSSV KAVNSRWTSP SPSPSSRFAV LPAFLHRRYA TSVKLTAISA ALKTVEQTTL TEDNRFSTVG SDSDEYNPTL PKPRILVTEK LGEAGVNLLR
101: EFGDVDCSYD LSPEDLKKKV AESDALIVRS GTKVTREVFE AAKGRLKVVG RAGVGIDNVD LQAATEHGCL VVNAPTANTV AAAEHGIALL ASMARNVAQA
201: DASIKAGKWE RSKYVGVSLV GKTLAVMGFG KVGTEVARRA KGLGMTVISH DPYAPADRAR ALGVDLVSFD QAISTADFVS LHMPLTPATK KVFNDETFSK
301: MKKGVRLINV ARGGVIDEDA LVRALDAGIV AQAALDVFCE EPPSKDSRLI QHENVTVTPH LGASTKEAQE GVAIEIAEAV AGALKGELSA TAVNAPMVAP
401: EVLSELTPYI VLAEKLGRLA VQLASGGKGV QSIRVVYRSA RDRDDLDTRL LRAMITKGII EPISDSYVNL VNADFIAKQK GLRISEERMV VDSSPEYPVD
501: SIQVQILNVE SNFAGAVSDA GDISIEGKVK YGVPHLTCVG SFGVDVSLEG NLILCRQVDQ PGMIGQVGNI LGEQNVNVNF MSVGRTVLRK QAIMAIGVDE
601: EPDNKTLERI GGVSAIEEFV FLKL
Arabidopsis Description
PGDHD-3-phosphoglycerate dehydrogenase [Source:TAIR;Acc:AT1G17745]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.