CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
plastid 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
BaCelLo:	cytosol
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY57737	Canola	cytosol	48.54	97.08
CDX72462	Canola	plastid	100.0	57.19
CDY49286	Canola	plastid	100.0	57.19
CDX75409	Canola	plastid	98.25	56.38
CDX76268	Canola	plastid	97.08	55.33
CDX69034	Canola	plastid	98.54	53.32
CDY22972	Canola	plastid	80.7	47.02
CDX82295	Canola	plastid	80.41	46.85
CDX96754	Canola	plastid	75.73	41.71
CDX83893	Canola	plastid	75.73	41.64
CDY57736	Canola	plastid	34.5	30.97
CDY17092	Canola	cytosol	9.06	29.25
CDY54697	Canola	mitochondrion	9.36	21.62
CDX87280	Canola	cytosol	11.99	13.23
CDX67931	Canola	cytosol	11.4	12.46
CDY58781	Canola	cytosol	11.4	12.46
CDX79406	Canola	cytosol	11.4	12.46
CDY16011	Canola	cytosol, peroxisome, plastid	10.53	12.16
CDY57070	Canola	cytosol	10.82	11.49
CDX85582	Canola	mitochondrion	12.87	11.49
CDY09885	Canola	mitochondrion	12.28	10.97
CDX91020	Canola	mitochondrion	12.28	10.94
CDX69558	Canola	mitochondrion	12.28	10.94
CDY07405	Canola	cytosol	12.28	10.88
CDX68275	Canola	mitochondrion	11.7	10.75
CDX98054	Canola	cytosol	10.82	10.72
CDY50445	Canola	mitochondrion	11.4	10.46
CDY04198	Canola	cytosol	11.99	10.41
CDX96054	Canola	mitochondrion	12.57	9.39
CDY26571	Canola	plastid	7.02	8.11
CDY26572	Canola	cytosol	4.68	6.64
CDY16010	Canola	cytosol, nucleus, plastid	10.53	6.53
CDY01876	Canola	endoplasmic reticulum, plasma membrane	12.57	6.2
CDY26570	Canola	cytosol	6.43	4.89
CDY16012	Canola	cytosol, nucleus, peroxisome	2.05	2.9

Protein Annotations

Gene3D:3.30.1330.90	Gene3D:3.30.70.260	Gene3D:3.40.50.720	MapMan:4.1.4.1.1	GO:A0A078FD24	UniProt:A0A078FD24
InterPro:ACT_dom	InterPro:ASB_dom_sf	EnsemblPlants:CDY12275	ProteinID:CDY12275	ProteinID:CDY12275.1	InterPro:D-isomer_DH_CS
InterPro:D-isomer_DH_NAD-bd	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0008150	GO:GO:0008152
GO:GO:0051287	GO:GO:0055114	EnsemblPlantsGene:GSBRNA2T00061337001	InterPro:IPR002912	InterPro:IPR029009	InterPro:NAD(P)-bd_dom_sf
PFAM:PF01842	PFAM:PF02826	ScanProsite:PS00671	PFscan:PS51671	PANTHER:PTHR42938	PANTHER:PTHR42938:SF14
SUPFAM:SSF143548	SUPFAM:SSF51735	SUPFAM:SSF55021	UniParc:UPI0004EDF1E5	SEG:seg	:

Description

BnaA09g24750DBnaA09g24750D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FD24]

Coordinates

chrLK032019:+:337651..338839

Molecular Weight (calculated)

36244.0 Da

IEP (calculated)

4.932

GRAVY (calculated)

0.108

Length

342 amino acids

Sequence
(BLAST)

001: MPLTPATSKI LNDETFAKMK KGVRIVNVAR GGVIDEDALV RALDAGIVAQ AALDVFTKEP PAKDSPLVQH ERVTVTPHLG ASTMEAQEGV AIEIAEAVVG
101: ALNGELAATA VNAPMVSAEV LTELKPYVVL AEKLGRLAVQ LVAGGSGVKN VKVSYTSARA TDDLDTRLLR AMITKGIIEP ISDVYVNLVN ADFTAKQRGL
201: RLSEERVVLD GSPENPLETI TVKLGNVESK FASSLSESGE VKVEGKVKDG VPHLTKVGSF EVDVTLEGSI ILCRQVDQPG MIGTVGSILG ESNVNVNFMS
301: VGRIAPRKQA IMAIGVDDQP SKETLKKIGE IPAVEEFVFL KL

Best Arabidopsis Sequence Match ( AT1G17745.1 )
(BLAST)

001: MAFSSSCSSV KAVNSRWTSP SPSPSSRFAV LPAFLHRRYA TSVKLTAISA ALKTVEQTTL TEDNRFSTVG SDSDEYNPTL PKPRILVTEK LGEAGVNLLR
101: EFGDVDCSYD LSPEDLKKKV AESDALIVRS GTKVTREVFE AAKGRLKVVG RAGVGIDNVD LQAATEHGCL VVNAPTANTV AAAEHGIALL ASMARNVAQA
201: DASIKAGKWE RSKYVGVSLV GKTLAVMGFG KVGTEVARRA KGLGMTVISH DPYAPADRAR ALGVDLVSFD QAISTADFVS LHMPLTPATK KVFNDETFSK
301: MKKGVRLINV ARGGVIDEDA LVRALDAGIV AQAALDVFCE EPPSKDSRLI QHENVTVTPH LGASTKEAQE GVAIEIAEAV AGALKGELSA TAVNAPMVAP
401: EVLSELTPYI VLAEKLGRLA VQLASGGKGV QSIRVVYRSA RDRDDLDTRL LRAMITKGII EPISDSYVNL VNADFIAKQK GLRISEERMV VDSSPEYPVD
501: SIQVQILNVE SNFAGAVSDA GDISIEGKVK YGVPHLTCVG SFGVDVSLEG NLILCRQVDQ PGMIGQVGNI LGEQNVNVNF MSVGRTVLRK QAIMAIGVDE
601: EPDNKTLERI GGVSAIEEFV FLKL

Arabidopsis Description

PGDHD-3-phosphoglycerate dehydrogenase [Source:TAIR;Acc:AT1G17745]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.