CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX96754	Canola	plastid	98.39	98.55
Bra016589.1-P	Field mustard	plastid	98.23	98.39
AT1G17745.2	Thale cress	plastid	90.68	86.64
CDY12275	Canola	cytosol	41.64	75.73
KRH44645	Soybean	nucleus	75.24	75.36
Solyc03g123830.2.1	Tomato	plastid	75.4	74.8
KRH47008	Soybean	endoplasmic reticulum	74.92	74.8
VIT_09s0018g01870.t01	Wine grape	plastid	74.44	74.2
PGSC0003DMT400023675	Potato	plastid	76.05	74.14
CDX75409	Canola	plastid	69.29	72.32
GSMUA_Achr10P...	Banana	plastid	71.22	71.92
GSMUA_Achr3P27990_001	Banana	plastid	70.9	71.71
CDY49286	Canola	plastid	68.81	71.57
CDX72462	Canola	plastid	68.81	71.57
CDX76268	Canola	plastid	68.97	71.5
CDY57737	Canola	cytosol	19.61	71.34
CDY57736	Canola	plastid	43.41	70.87
CDX82295	Canola	plastid	66.72	70.7
CDY22972	Canola	plastid	66.72	70.7
GSMUA_Achr9P22790_001	Banana	plastid	57.72	68.38
CDX69034	Canola	plastid	69.45	68.35
CDY17092	Canola	cytosol	5.47	32.08
CDX87280	Canola	cytosol	13.67	27.42
CDY58781	Canola	cytosol	13.5	26.84
CDY07405	Canola	cytosol	16.4	26.42
CDY57070	Canola	cytosol	13.67	26.4
CDY16011	Canola	cytosol, peroxisome, plastid	12.54	26.35
CDY54697	Canola	mitochondrion	6.27	26.35
CDY04198	Canola	cytosol	16.24	25.63
CDX67931	Canola	cytosol	12.86	25.56
CDX79406	Canola	cytosol	12.86	25.56
CDX98054	Canola	cytosol	13.83	24.93
CDX68275	Canola	mitochondrion	14.31	23.92
CDY50445	Canola	mitochondrion	14.31	23.86
CDY26572	Canola	cytosol	9.16	23.65
CDY26571	Canola	plastid	11.25	23.65
CDX85582	Canola	mitochondrion	14.15	22.98
CDX69558	Canola	mitochondrion	14.15	22.92
CDY09885	Canola	mitochondrion	13.99	22.72
CDX91020	Canola	mitochondrion	13.83	22.4
CDX96054	Canola	mitochondrion	16.24	22.05
CDY16012	Canola	cytosol, nucleus, peroxisome	8.36	21.58
CDY16010	Canola	cytosol, nucleus, plastid	14.79	16.7
CDY26570	Canola	cytosol	11.74	16.22
CDY01876	Canola	endoplasmic reticulum, plasma membrane	16.4	14.72

Protein Annotations

KEGG:00260+1.1.1.95	KEGG:00680+1.1.1.95	Gene3D:3.30.1330.90	Gene3D:3.30.70.260	Gene3D:3.40.50.720	MapMan:4.1.4.1.1
GO:A0A078D966	InterPro:ACT_dom	InterPro:ASB_dom_sf	EnsemblPlants:CDX83893	ProteinID:CDX83893	ProteinID:CDX83893.1
InterPro:D-isomer_2_OHA_DH_cat_dom	InterPro:D-isomer_DH_CS	InterPro:D-isomer_DH_CS1	InterPro:D-isomer_DH_NAD-bd	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0004617	GO:GO:0005488	GO:GO:0006564	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0016616	GO:GO:0051287	GO:GO:0055114	EnsemblPlantsGene:GSBRNA2T00139667001
InterPro:IPR002912	InterPro:IPR029009	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00389	PFAM:PF01842	PFAM:PF02826
InterPro:PGDH	ScanProsite:PS00065	ScanProsite:PS00670	ScanProsite:PS00671	PFscan:PS51671	PANTHER:PTHR42938
PANTHER:PTHR42938:SF14	SUPFAM:SSF143548	SUPFAM:SSF51735	SUPFAM:SSF52283	SUPFAM:SSF55021	TIGRFAMs:TIGR01327
UniPathway:UPA00135	UniParc:UPI0004EF29D5	SEG:seg	:	:	:

Description

BnaC08g17520D

Coordinates

chrLK031834:-:1013970..1018568

Molecular Weight (calculated)

66359.9 Da

IEP (calculated)

5.857

GRAVY (calculated)

-0.006

Length

622 amino acids

Sequence
(BLAST)

001: MALSSSCSTL KAVNSRWTSP VPKLAALRRQ YSLLPELRYT PNVKLTATNA LRTVEQTTLT EDNKLSTYGS DQEDQESLPK PRILVAEKLG EAGVNLLKDF
101: GDVDCSYELS PEDLKKKVAE SDALIVRSGT KVTREVFEAA KGRLKVVGRA GVGIDNVDLQ AATEYGCLVV NAPTANTVAA AEHGIALLAS MARNVAQADA
201: SIKAGKWERS KYVGVSLVGK TLAIMGFGKV GTEVARRAKG LGMNVISHDP YAPADRARAL GVELVSFDQA ISTADFISLH MPLTPATKKV FNDETFSKMK
301: KGVRLINVAR GGVIDEDALV RALDSGVVAQ AALDVFCEEP PSKESRLIQH ENVTVTPHLG ASTKEAQEGV AIEIAEAVAG ALRGELSATA VNAPMVAPEV
401: LSELAPYIVL AEKLGRLAVQ LASGGKGVQS IKVVYRSARD RDDLDTRLLR AMITKGIIEP ISDSYVNLVN ADFIAKQKGL RISEERTMVE SSPEYPVDSI
501: QVQISNVESS FAGAVSDAGA ISIEGKVKYG VPHLTCVGSF GVDVSLEGNL ILCRQVDQPG MIGQVGNILG EQNVNVSFMS VGRTVVRKQA IMAIGVDEEP
601: DKKTLEKIGG VSAIEEFVFL KL

Best Arabidopsis Sequence Match ( AT1G17745.1 )
(BLAST)

001: MAFSSSCSSV KAVNSRWTSP SPSPSSRFAV LPAFLHRRYA TSVKLTAISA ALKTVEQTTL TEDNRFSTVG SDSDEYNPTL PKPRILVTEK LGEAGVNLLR
101: EFGDVDCSYD LSPEDLKKKV AESDALIVRS GTKVTREVFE AAKGRLKVVG RAGVGIDNVD LQAATEHGCL VVNAPTANTV AAAEHGIALL ASMARNVAQA
201: DASIKAGKWE RSKYVGVSLV GKTLAVMGFG KVGTEVARRA KGLGMTVISH DPYAPADRAR ALGVDLVSFD QAISTADFVS LHMPLTPATK KVFNDETFSK
301: MKKGVRLINV ARGGVIDEDA LVRALDAGIV AQAALDVFCE EPPSKDSRLI QHENVTVTPH LGASTKEAQE GVAIEIAEAV AGALKGELSA TAVNAPMVAP
401: EVLSELTPYI VLAEKLGRLA VQLASGGKGV QSIRVVYRSA RDRDDLDTRL LRAMITKGII EPISDSYVNL VNADFIAKQK GLRISEERMV VDSSPEYPVD
501: SIQVQILNVE SNFAGAVSDA GDISIEGKVK YGVPHLTCVG SFGVDVSLEG NLILCRQVDQ PGMIGQVGNI LGEQNVNVNF MSVGRTVLRK QAIMAIGVDE
601: EPDNKTLERI GGVSAIEEFV FLKL

Arabidopsis Description

PGDHD-3-phosphoglycerate dehydrogenase [Source:TAIR;Acc:AT1G17745]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.