Factsheet for PGSC0003DMT400023675

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g123830.2.1	Tomato	plastid	96.87	98.56
VIT_09s0018g01870.t01	Wine grape	plastid	76.8	78.53
KRH44645	Soybean	nucleus	75.24	77.29
KRH47008	Soybean	endoplasmic reticulum	74.92	76.73
CDX83893	Canola	plastid	74.14	76.05
CDX96754	Canola	plastid	73.98	76.01
Bra016589.1-P	Field mustard	plastid	73.82	75.85
PGSC0003DMT400059818	Potato	plastid	70.53	75.63
GSMUA_Achr10P...	Banana	plastid	72.73	75.32
PGSC0003DMT400046698	Potato	plastid	70.22	74.67
GSMUA_Achr3P27990_001	Banana	plastid	71.32	73.98
GSMUA_Achr9P22790_001	Banana	plastid	59.56	72.38
AT1G17745.2	Thale cress	plastid	73.35	71.89
PGSC0003DMT400071027	Potato	cytosol	13.01	26.95
PGSC0003DMT400019584	Potato	cytosol	13.17	26.84
PGSC0003DMT400058518	Potato	cytosol	5.8	26.62
PGSC0003DMT400015828	Potato	cytosol	15.99	26.42
PGSC0003DMT400085920	Potato	mitochondrion	7.52	26.09
PGSC0003DMT400019586	Potato	extracellular	12.85	26.03
PGSC0003DMT400058520	Potato	cytosol	12.38	24.31
PGSC0003DMT400001303	Potato	mitochondrion	11.91	19.95
PGSC0003DMT400068907	Potato	cytosol	3.29	13.91

Protein Annotations

KEGG:00260+1.1.1.95	KEGG:00680+1.1.1.95	EntrezGene:102580248	Gene3D:3.30.1330.90	Gene3D:3.30.70.260	Gene3D:3.40.50.720
MapMan:4.1.4.1.1	InterPro:ACT_dom	InterPro:ASB_dom_sf	InterPro:D-isomer_2_OHA_DH_cat_dom	InterPro:D-isomer_DH_CS	InterPro:D-isomer_DH_CS1
InterPro:D-isomer_DH_NAD-bd	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004617	GO:GO:0005488
GO:GO:0006564	GO:GO:0008150	GO:GO:0008152	GO:GO:0008652	GO:GO:0009058	GO:GO:0009987
GO:GO:0016491	GO:GO:0016616	GO:GO:0051287	GO:GO:0055114	InterPro:IPR002912	InterPro:IPR029009
UniProt:M1AIT2	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00389	PFAM:PF01842	PFAM:PF02826	InterPro:PGDH
EnsemblPlantsGene:PGSC0003DMG400009159	PGSC:PGSC0003DMG400009159	EnsemblPlants:PGSC0003DMT400023675	ScanProsite:PS00065	ScanProsite:PS00670	ScanProsite:PS00671
PFscan:PS51671	PANTHER:PTHR42938	PANTHER:PTHR42938:SF14	SUPFAM:SSF143548	SUPFAM:SSF51735	SUPFAM:SSF52283
SUPFAM:SSF55021	TIGRFAMs:TIGR01327	UniParc:UPI000295B9AD	RefSeq:XP_006342872.1	SEG:seg	:

Description

D-3-phosphoglycerate dehydrogenase, chloroplastic [Source:PGSC_GENE;Acc:PGSC0003DMG400009159]

Coordinates

chr3:+:61835016..61838224

Molecular Weight (calculated)

67160.7 Da

IEP (calculated)

6.707

GRAVY (calculated)

0.092

Length

638 amino acids

Sequence
(BLAST)

001: MASTPSPHTA ATAHLNSLLS SSSSVNHNKP SNLSFLHASS NPSSIKLLHS VSASSSFPPS ISSSSSTTSI CNVLKTVESA DISLSRDLHG VVSTSKPTIL
101: VSEKLGEAGL DLLRSFGNVD CSYDLSPQDL CTKISLCDAL IVRSGTKVTR EVFEAAQGRL KVVGRAGVGI DNVDLQAATE FGCLVVNAPT ANTIAAAEHG
201: IALLTSMARN VAQSDASMKA GKWLRSKYVG VSLVGKTLAI MGFGKVGSEV ARRAKGLGMH VIAHDPYAPA DRARAIGVDL VSFEQAISTA DFISLHMPLT
301: PATNKVFNDD TFAKMKKGVR LINVARGGVI DEDALVRALD SGIVAQAALD VFTVEPPPKD SKLVQHENVT VTPHLGASTK EAQEGVAIEI AEAVVGALNG
401: ELSATAVNAP MVPPEVLSEL APYVVLAEKL GRLAVQLVTG GSGIQSVKVV YKSARDPDSL DTRLLRAMVT KGIIEPISDT IINLVNADFS AKQKGLRISE
501: ERIIVDSSPE YPVESIQVQI SNVQSRFASA LSENGNISIE GKVKYGVPHL TRVGPFSVDV SLEGNLILCK QVDQPGMIGK VGNILGESNV NVSFMSVGRT
601: VKGKQAIMAI GVDEEPDKDT QKKIGEVSAV EEFVFLKL

Best Arabidopsis Sequence Match ( AT1G17745.1 )
(BLAST)

001: MAFSSSCSSV KAVNSRWTSP SPSPSSRFAV LPAFLHRRYA TSVKLTAISA ALKTVEQTTL TEDNRFSTVG SDSDEYNPTL PKPRILVTEK LGEAGVNLLR
101: EFGDVDCSYD LSPEDLKKKV AESDALIVRS GTKVTREVFE AAKGRLKVVG RAGVGIDNVD LQAATEHGCL VVNAPTANTV AAAEHGIALL ASMARNVAQA
201: DASIKAGKWE RSKYVGVSLV GKTLAVMGFG KVGTEVARRA KGLGMTVISH DPYAPADRAR ALGVDLVSFD QAISTADFVS LHMPLTPATK KVFNDETFSK
301: MKKGVRLINV ARGGVIDEDA LVRALDAGIV AQAALDVFCE EPPSKDSRLI QHENVTVTPH LGASTKEAQE GVAIEIAEAV AGALKGELSA TAVNAPMVAP
401: EVLSELTPYI VLAEKLGRLA VQLASGGKGV QSIRVVYRSA RDRDDLDTRL LRAMITKGII EPISDSYVNL VNADFIAKQK GLRISEERMV VDSSPEYPVD
501: SIQVQILNVE SNFAGAVSDA GDISIEGKVK YGVPHLTCVG SFGVDVSLEG NLILCRQVDQ PGMIGQVGNI LGEQNVNVNF MSVGRTVLRK QAIMAIGVDE
601: EPDNKTLERI GGVSAIEEFV FLKL

Arabidopsis Description

PGDHD-3-phosphoglycerate dehydrogenase [Source:TAIR;Acc:AT1G17745]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.