Factsheet for PGSC0003DMT400085920

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 6
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400071027	Potato	cytosol	72.83	43.51
GSMUA_Achr3P21910_001	Banana	cytosol	59.24	31.96
VIT_18s0041g01830.t01	Wine grape	cytosol	59.24	31.78
CDY50445	Canola	mitochondrion	61.41	30.29
CDX68275	Canola	mitochondrion	60.87	30.11
Bra003888.1-P	Field mustard	mitochondrion	60.33	29.84
AT1G72190.1	Thale cress	mitochondrion	59.78	29.49
Os07t0263400-00	Rice	cytosol	45.11	29.23
TraesCS7B01G373500.1	Wheat	cytosol	16.3	28.85
KRH62463	Soybean	mitochondrion	59.78	28.13
KXG34859	Sorghum	mitochondrion, plastid	58.7	28.12
Os07t0264100-01	Rice	mitochondrion	57.07	28.07
TraesCS5B01G158700.2	Wheat	mitochondrion, plastid	57.07	27.78
TraesCS5A01G161300.1	Wheat	plastid	57.07	27.78
TraesCS5D01G166200.2	Wheat	mitochondrion, plastid	56.52	27.51
PGSC0003DMT400058518	Potato	cytosol	20.65	27.34
HORVU5Hr1G050350.1	Barley	mitochondrion, plastid	57.07	26.38
EER96197	Sorghum	mitochondrion	54.89	26.23
Zm00001d005489_P006	Maize	mitochondrion	54.35	25.58
PGSC0003DMT400019584	Potato	cytosol	26.09	15.34
PGSC0003DMT400058520	Potato	cytosol	24.46	13.85
PGSC0003DMT400019586	Potato	extracellular	23.37	13.65
PGSC0003DMT400001303	Potato	mitochondrion	24.46	11.81
PGSC0003DMT400015828	Potato	cytosol	19.57	9.33
PGSC0003DMT400046698	Potato	plastid	25.54	7.83
PGSC0003DMT400059818	Potato	plastid	24.46	7.56
PGSC0003DMT400023675	Potato	plastid	26.09	7.52
PGSC0003DMT400068907	Potato	cytosol	2.17	2.65

Protein Annotations

EnsemblPlants:PGSC0003DMT400085920	EnsemblPlantsGene:PGSC0003DMG400035491	Gene3D:3.40.50.720	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488
GO:GO:0008150	GO:GO:0008152	GO:GO:0051287	GO:GO:0055114	InterPro:D-isomer_DH_CS	InterPro:D-isomer_DH_NAD-bd
InterPro:NAD(P)-bd_dom_sf	PANTHER:PTHR42938	PANTHER:PTHR42938:SF2	PFAM:PF02826	PGSC:PGSC0003DMG400035491	ScanProsite:PS00671
SEG:seg	SUPFAM:SSF51735	UniParc:UPI000295B61A	UniProt:M1DAK5	MapMan:35.2	:

Description

Phosphoglycerate dehydrogenase [Source:PGSC_GENE;Acc:PGSC0003DMG400035491]

Coordinates

chr6:-:46583846..46585678

Molecular Weight (calculated)

20064.5 Da

IEP (calculated)

7.055

GRAVY (calculated)

0.119

Length

184 amino acids

Sequence
(BLAST)

001: MHLAKRLRPF DVKIIATKRS WPNSMLDSTK GLCIGINGTN YNYDDLVDER GSHDDILKFA SKADIVVSCL PMTTETIGIV NNDFVSAMKK GALLINIGRG
101: GVLDYEAVYN NLKLGHLGGL GIDVAWTEPF DPLNPILQLP NVIITPHVAG VTQSSFRYMA KVVGDVALQL HAGKMPYVGI EIVN

Best Arabidopsis Sequence Match ( AT1G72190.1 )
(BLAST)

001: MTIMFKIAKA TLRSRNSSVA SLFYSIQARS ISRQSKVVKI ERIVEKEDMH VTRVLFCGPH FPDSYNFTRE YLQPYPFIKV DVVHYRDVPE VIKNYHICVA
101: MTMQMDSNVI SRASNIKLIM QYGVGLDGVD IDAATKHGIK VARIPSEGTG NAASCSEMAI YLMLGLLKKQ NEMQISLRNR LLGEPTGDTL LGKTVFILGY
201: GNIGIELAKR LKPFGSRVIA TKRFWPASIV DSDSRLVDEK GSHEDIYTFA GKADIVVVCL RLNKETAEIV NKEFICSMKK GALLVNIARG GLINYESAFQ
301: NLESGHLGGL GIDVAWSEPF DPNDPILKFK NVIITPHVAG VTEYSYRSMA KIVGDLALQL HEGLPLTGIE FVN

Arabidopsis Description

D-isomer specific 2-hydroxyacid dehydrogenase family protein [Source:UniProtKB/TrEMBL;Acc:F4IBQ3]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.