Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 3
- cytosol 3
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400001303 | Potato | mitochondrion | 65.56 | 25.98 |
| AT5G14780.1 | Thale cress | mitochondrion | 60.93 | 23.96 |
| CDY09885 | Canola | mitochondrion | 59.6 | 23.5 |
| Bra008737.1-P | Field mustard | mitochondrion | 59.6 | 23.44 |
| CDX69558 | Canola | mitochondrion | 59.6 | 23.44 |
| CDX85582 | Canola | mitochondrion | 58.94 | 23.24 |
| Bra023487.1-P | Field mustard | mitochondrion | 58.28 | 22.92 |
| CDX91020 | Canola | mitochondrion | 58.28 | 22.92 |
| PGSC0003DMT400019586 | Potato | extracellular | 13.91 | 6.67 |
| PGSC0003DMT400058520 | Potato | cytosol | 11.92 | 5.54 |
| PGSC0003DMT400071027 | Potato | cytosol | 11.26 | 5.52 |
| PGSC0003DMT400019584 | Potato | cytosol | 10.6 | 5.11 |
| PGSC0003DMT400046698 | Potato | plastid | 17.22 | 4.33 |
| PGSC0003DMT400059818 | Potato | plastid | 15.89 | 4.03 |
| PGSC0003DMT400015828 | Potato | cytosol | 8.61 | 3.37 |
| PGSC0003DMT400023675 | Potato | plastid | 13.91 | 3.29 |
| PGSC0003DMT400085920 | Potato | mitochondrion | 2.65 | 2.17 |
| PGSC0003DMT400058518 | Potato | cytosol | 1.99 | 2.16 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400068907 | EnsemblPlantsGene:PGSC0003DMG400026801 | Gene3D:3.40.50.720 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0005488 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0016616 | GO:GO:0051287 | GO:GO:0055114 |
| InterPro:D-isomer_2_OHA_DH_cat_dom | PANTHER:PTHR42938 | PANTHER:PTHR42938:SF1 | PFAM:PF00389 | PGSC:PGSC0003DMG400026801 | SUPFAM:SSF52283 |
| UniParc:UPI0002948093 | UniProt:M1CJN3 | MapMan:35.1 | : | : | : |
Description
Formate dehydrogenase [Source:PGSC_GENE;Acc:PGSC0003DMG400026801]
Coordinates
chr12:+:31948919..31951109
Molecular Weight (calculated)
16387.3 Da
IEP (calculated)
4.903
GRAVY (calculated)
-0.166
Length
151 amino acids
Sequence
(BLAST)
(BLAST)
001: MNYHFLGCAE NALGIREWLD SKGHQYIVTP EKEGPDCGTF ILDLHVLIST LFHPAYVTTE RIKKAKNLQL LLTGGIGSDH VDLKAAAATG LTVAEDTVEM
101: FGTHNQLPRT IYGATCQPSY DASHSGTTID AQDFGTPTSP ADEIENRLLL A
101: FGTHNQLPRT IYGATCQPSY DASHSGTTID AQDFGTPTSP ADEIENRLLL A
001: MAMRQAAKAT IRACSSSSSS GYFARRQFNA SSGDSKKIVG VFYKANEYAT KNPNFLGCVE NALGIRDWLE SQGHQYIVTD DKEGPDCELE KHIPDLHVLI
101: STPFHPAYVT AERIKKAKNL KLLLTAGIGS DHIDLQAAAA AGLTVAEVTG SNVVSVAEDE LMRILILMRN FVPGYNQVVK GEWNVAGIAY RAYDLEGKTI
201: GTVGAGRIGK LLLQRLKPFG CNLLYHDRLQ MAPELEKETG AKFVEDLNEM LPKCDVIVIN MPLTEKTRGM FNKELIGKLK KGVLIVNNAR GAIMERQAVV
301: DAVESGHIGG YSGDVWDPQP APKDHPWRYM PNQAMTPHTS GTTIDAQLRY AAGTKDMLER YFKGEDFPTE NYIVKDGELA PQYR
101: STPFHPAYVT AERIKKAKNL KLLLTAGIGS DHIDLQAAAA AGLTVAEVTG SNVVSVAEDE LMRILILMRN FVPGYNQVVK GEWNVAGIAY RAYDLEGKTI
201: GTVGAGRIGK LLLQRLKPFG CNLLYHDRLQ MAPELEKETG AKFVEDLNEM LPKCDVIVIN MPLTEKTRGM FNKELIGKLK KGVLIVNNAR GAIMERQAVV
301: DAVESGHIGG YSGDVWDPQP APKDHPWRYM PNQAMTPHTS GTTIDAQLRY AAGTKDMLER YFKGEDFPTE NYIVKDGELA PQYR
Arabidopsis Description
FDH1Formate dehydrogenase, mitochondrial [Source:UniProtKB/TrEMBL;Acc:A0A178UHK7]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.