Factsheet for PGSC0003DMT400015828

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
plastid 1
peroxisome 5

Predictors

GFP

MS/MS

Papers

cytosol: 22313117
extracellular: 22313117

msms PMID: 22313117 doi

S Lim, K Chisholm, RH Coffin, RD Peters, KI Al-Mughrabi, G Wang-Pruski, DM Pinto

Department of Plant and Animal Sciences, Nova Scotia Agricultural College, Truro, Nova Scotia, Canada.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g111630.2.1	Tomato	nucleus, plastid	98.7	98.7
Bra004055.1-P	Field mustard	cytosol	90.41	90.41
CDY07405	Canola	cytosol	90.41	90.41
Bra004275.1-P	Field mustard	cytosol	90.41	90.41
AT1G68010.2	Thale cress	cytosol	89.9	89.66
VIT_03s0038g02510.t01	Wine grape	cytosol, peroxisome, plastid	89.38	89.38
KRH36064	Soybean	nucleus	89.12	89.12
Os02t0101500-02	Rice	extracellular, mitochondrion	88.86	88.86
KRG90684	Soybean	nucleus	88.34	88.34
TraesCS6D01G001700.1	Wheat	golgi, plastid	88.08	88.08
TraesCS6B01G004400.1	Wheat	peroxisome	88.08	88.08
TraesCS6A01G000400.1	Wheat	peroxisome	88.08	88.08
CDY04198	Canola	cytosol	89.38	87.56
KXG29243	Sorghum	cytosol	86.27	87.4
GSMUA_Achr5P18940_001	Banana	cytosol	34.2	84.08
HORVU6Hr1G017010.1	Barley	cytosol	23.06	83.18
GSMUA_Achr5P18950_001	Banana	cytosol	48.19	82.67
CDX96054	Canola	mitochondrion	90.93	76.64
TraesCS5B01G226200.1	Wheat	cytosol	25.13	71.85
HORVU6Hr1G000640.1	Barley	cytosol	55.44	70.63
Zm00001d014919_P002	Maize	mitochondrion	78.24	69.91
HORVU6Hr1G000650.2	Barley	peroxisome	34.72	69.43
CDY01876	Canola	endoplasmic reticulum, plasma membrane	90.16	50.22
PGSC0003DMT400058518	Potato	cytosol	12.18	33.81
PGSC0003DMT400019586	Potato	extracellular	24.87	30.48
PGSC0003DMT400019584	Potato	cytosol	23.58	29.07
PGSC0003DMT400058520	Potato	cytosol	20.47	24.31
PGSC0003DMT400071027	Potato	cytosol	18.13	22.73
PGSC0003DMT400085920	Potato	mitochondrion	9.33	19.57
PGSC0003DMT400001303	Potato	mitochondrion	18.13	18.37
PGSC0003DMT400046698	Potato	plastid	26.17	16.83
PGSC0003DMT400059818	Potato	plastid	25.39	16.47
PGSC0003DMT400023675	Potato	plastid	26.42	15.99
PGSC0003DMT400068907	Potato	cytosol	3.37	8.61

Protein Annotations

MapMan:1.3.6	EntrezGene:102601319	Gene3D:3.40.50.720	InterPro:D-isomer_2_OHA_DH_cat_dom	InterPro:D-isomer_DH_CS1	InterPro:D-isomer_DH_NAD-bd
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0008150	GO:GO:0008152
GO:GO:0016491	GO:GO:0016616	GO:GO:0051287	GO:GO:0055114	UniProt:M1A6N6	InterPro:NAD(P)-bd_dom_sf
PFAM:PF00389	PFAM:PF02826	EnsemblPlantsGene:PGSC0003DMG400006186	PGSC:PGSC0003DMG400006186	EnsemblPlants:PGSC0003DMT400015828	ScanProsite:PS00065
PANTHER:PTHR10996	PANTHER:PTHR10996:SF137	SUPFAM:SSF51735	SUPFAM:SSF52283	UniParc:UPI000295BF6D	RefSeq:XP_006359703.1
SEG:seg	:	:	:	:	:

Description

Hydroxypyruvate reductase [Source:PGSC_GENE;Acc:PGSC0003DMG400006186]

Coordinates

chr1:+:87612479..87616575

Molecular Weight (calculated)

42239.2 Da

IEP (calculated)

7.021

GRAVY (calculated)

-0.024

Length

386 amino acids

Sequence
(BLAST)

001: MAKPVQIEVW NPNGKYRVVS TKSMPGTRWI NLLIQQDCRL EICTEKKTIL SVDDILALIG DRCDGVIGQL TEDWGETLFS ALSKAGGKAF SNMAVGYNNV
101: DVEAANKYGV AVGNTPGVLT ETTAELAASL SLAAARRIVE ADEFMRAGKY EGWLPHLFVG NLLKGQTVGV IGAGRIGSAY ARMMVEGFKM NLIYYDLYQS
201: TRLEKFVTAY GQFLKANGEQ PVTWKRASSM EEVLQEADVI SLHPILDKTT YHLVNKERLA LMKKEAILVN CSRGPVVDEV ALVEHLRENP MFRVGLDVFE
301: DEPYMKPGLA DMKNAVVVPH IASASKWTRE GMATLAALNV LGKIKGYPIW SNPNSVEPFL NENATPPAAC PSIVNSKAIG LAVSKL

Best Arabidopsis Sequence Match ( AT1G68010.1 )
(BLAST)

001: MAKPVSIEVY NPNGKYRVVS TKPMPGTRWI NLLVDQGCRV EICHLKKTIL SVEDIIDLIG DKCDGVIGQL TEDWGETLFS ALSKAGGKAF SNMAVGYNNV
101: DVEAANKYGI AVGNTPGVLT ETTAELAASL SLAAARRIVE ADEFMRGGLY EGWLPHLFVG NLLKGQTVGV IGAGRIGSAY ARMMVEGFKM NLIYFDLYQS
201: TRLEKFVTAY GQFLKANGEQ PVTWKRASSM EEVLREADLI SLHPVLDKTT YHLVNKERLA MMKKEAILVN CSRGPVIDEA ALVEHLKENP MFRVGLDVFE
301: EEPFMKPGLA DTKNAIVVPH IASASKWTRE GMATLAALNV LGRVKGYPIW HDPNRVDPFL NENASPPNAS PSIVNSKALG LPVSKL

Arabidopsis Description

HPRhydroxypyruvate reductase [Source:TAIR;Acc:AT1G68010]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.