Factsheet for TraesCS6D01G001700.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi, plastid

Predictor Summary:

plastid 1
peroxisome 3
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi, plastid
Any Predictor:	cytosol, peroxisome, plastid
iPSORT:	plastid
MultiLoc:	peroxisome
PProwler:	peroxisome
WoLF PSORT:	peroxisome
YLoc:	cytosol

plastid: 22160430
golgi: 25769308

msms PMID: 22160430 doi

AH Kamal, K Cho, S Komatsu, N Uozumi, JS Choi, SH Woo

Department of Crop Science, Chungbuk National University, 410 Seongbong-ro, Heungdeok-gu, Cheongju, Chungbuk, 361-763, Korea.

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6B01G004400.1	Wheat	peroxisome	100.0	100.0
TraesCS6A01G000400.1	Wheat	peroxisome	99.74	99.74
Os02t0101500-02	Rice	extracellular, mitochondrion	94.56	94.56
KXG29243	Sorghum	cytosol	91.97	93.18
GSMUA_Achr5P18940_001	Banana	cytosol	36.27	89.17
Solyc01g111630.2.1	Tomato	nucleus, plastid	88.6	88.6
PGSC0003DMT400015828	Potato	cytosol	88.08	88.08
VIT_03s0038g02510.t01	Wine grape	cytosol, peroxisome, plastid	86.27	86.27
KRH36064	Soybean	nucleus	86.01	86.01
Bra004055.1-P	Field mustard	cytosol	85.75	85.75
CDY07405	Canola	cytosol	85.75	85.75
KRG90684	Soybean	nucleus	85.49	85.49
Bra004275.1-P	Field mustard	cytosol	85.23	85.23
AT1G68010.2	Thale cress	cytosol	85.23	85.01
GSMUA_Achr5P18950_001	Banana	cytosol	49.48	84.89
CDY04198	Canola	cytosol	84.46	82.74
HORVU6Hr1G000640.1	Barley	cytosol	61.92	78.88
Zm00001d014919_P002	Maize	mitochondrion	83.42	74.54
CDX96054	Canola	mitochondrion	86.01	72.49
CDY01876	Canola	endoplasmic reticulum, plasma membrane	84.97	47.33
TraesCS3D01G160800.1	Wheat	cytosol	24.35	29.56
TraesCS2D01G034100.1	Wheat	mitochondrion	23.58	28.09
TraesCS2D01G034000.1	Wheat	cytosol, peroxisome, plastid	21.76	26.33
TraesCS2D01G034600.1	Wheat	mitochondrion	22.02	25.76
TraesCS2D01G034700.1	Wheat	mitochondrion, plastid	21.5	24.85
TraesCS2D01G030900.1	Wheat	cytosol	19.69	24.05
TraesCS2D01G034300.1	Wheat	plastid	22.02	23.48
TraesCS7D01G232300.1	Wheat	mitochondrion	19.43	19.89
TraesCS4D01G007200.1	Wheat	golgi	18.91	19.47
TraesCS6D01G255200.2	Wheat	mitochondrion	18.65	19.1
TraesCS5D01G166200.2	Wheat	mitochondrion, plastid	17.88	18.25
TraesCS5D01G389600.1	Wheat	extracellular, mitochondrion	15.8	16.62
TraesCS7D01G483800.1	Wheat	plastid	24.61	15.57
TraesCS1D01G222600.2	Wheat	plastid	24.61	15.35
TraesCS3D01G160900.1	Wheat	cytosol	2.07	4.3

Protein Annotations

MapMan:1.3.6	Gene3D:3.40.50.720	InterPro:D-isomer_2_OHA_DH_cat_dom	InterPro:D-isomer_DH_CS1	InterPro:D-isomer_DH_NAD-bd	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0008150	GO:GO:0008152	GO:GO:0016616
GO:GO:0051287	GO:GO:0055114	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00389	PFAM:PF02826	ScanProsite:PS00065
PANTHER:PTHR10996	PANTHER:PTHR10996:SF137	SUPFAM:SSF51735	SUPFAM:SSF52283	EnsemblPlantsGene:TraesCS6D01G001700	EnsemblPlants:TraesCS6D01G001700.1
TIGR:cd05301	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr6D:+:805502..808087

Molecular Weight (calculated)

42095.2 Da

IEP (calculated)

7.575

GRAVY (calculated)

0.002

Length

386 amino acids

Sequence
(BLAST)

001: MAKPISIEVW NPSGKYRVVS TKSMPGTRWI KLLTDNDCRL EICTEKKTIL SVDDILALIG DHCHGVIGQL TEDWGEVLFS ALKRAGGTAF SNMAVGYNNV
101: DVDAANRNGI AIGNTPGVLT ETTAELAASL SVAAARRIVE ADQFMRAGLY DGWLPHLFVG NLLKGQTVGV IGAGRIGSAY ARMMIEGFKM NLIYFDLYQS
201: TRLEKFVTAY GQFLKANGEQ PVTWKRASSM EEVLREADVI SLHPVLDKTT YHLINPERLA MMKKEAVLVN ASRGPVIDEV ALVEHLRANP MFRVGLDVFE
301: DEPYMKPGLA EMKNAVVVPH IASASKWTRE GMATLAALNV LGKIKGYPVW GNPNAVEPFL DEKAAPPPAC PSIVNAKQLG LPSSKL

Best Arabidopsis Sequence Match ( AT1G68010.1 )
(BLAST)

001: MAKPVSIEVY NPNGKYRVVS TKPMPGTRWI NLLVDQGCRV EICHLKKTIL SVEDIIDLIG DKCDGVIGQL TEDWGETLFS ALSKAGGKAF SNMAVGYNNV
101: DVEAANKYGI AVGNTPGVLT ETTAELAASL SLAAARRIVE ADEFMRGGLY EGWLPHLFVG NLLKGQTVGV IGAGRIGSAY ARMMVEGFKM NLIYFDLYQS
201: TRLEKFVTAY GQFLKANGEQ PVTWKRASSM EEVLREADLI SLHPVLDKTT YHLVNKERLA MMKKEAILVN CSRGPVIDEA ALVEHLKENP MFRVGLDVFE
301: EEPFMKPGLA DTKNAIVVPH IASASKWTRE GMATLAALNV LGRVKGYPIW HDPNRVDPFL NENASPPNAS PSIVNSKALG LPVSKL

Arabidopsis Description

HPRhydroxypyruvate reductase [Source:TAIR;Acc:AT1G68010]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.