Factsheet for TraesCS3D01G160900.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 2
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, peroxisome, secretory
iPSORT:	secretory
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g120670.2.1	Tomato	cytosol, nucleus, plastid	13.98	8.31
TraesCS3D01G160800.1	Wheat	cytosol	13.98	8.18
VIT_09s0002g04300.t01	Wine grape	cytosol	12.9	7.67
PGSC0003DMT400019586	Potato	extracellular	12.9	7.62
Solyc12g044250.1.1	Tomato	vacuole	12.9	7.62
CDX79406	Canola	cytosol	12.37	7.35
Bra035206.1-P	Field mustard	cytosol	11.83	7.1
CDX87280	Canola	cytosol	11.83	7.1
AT1G79870.1	Thale cress	cytosol	11.83	7.03
CDX67931	Canola	cytosol	11.83	7.03
Solyc12g044260.1.1	Tomato	cytosol	11.83	7.03
PGSC0003DMT400019584	Potato	cytosol	11.83	7.03
KRH09880	Soybean	cytosol	11.29	6.93
Solyc03g120680.2.1	Tomato	nucleus	11.29	6.75
Bra003537.1-P	Field mustard	cytosol	11.29	6.71
CDY58781	Canola	cytosol	11.29	6.71
KRH47286	Soybean	nucleus	11.29	6.71
VIT_09s0002g04290.t01	Wine grape	cytosol, plastid	10.75	6.39
TraesCS2D01G034100.1	Wheat	mitochondrion	8.06	4.63
TraesCS2D01G034000.1	Wheat	cytosol, peroxisome, plastid	7.53	4.39
TraesCS2D01G034600.1	Wheat	mitochondrion	7.53	4.24
TraesCS2D01G034700.1	Wheat	mitochondrion, plastid	7.53	4.19
TraesCS2D01G030900.1	Wheat	cytosol	5.38	3.16
TraesCS2D01G034300.1	Wheat	plastid	5.91	3.04
TraesCS6D01G001700.1	Wheat	golgi, plastid	4.3	2.07
TraesCS4D01G007200.1	Wheat	golgi	3.76	1.87
TraesCS6D01G255200.2	Wheat	mitochondrion	3.76	1.86
TraesCS7D01G232300.1	Wheat	mitochondrion	3.76	1.86
TraesCS5D01G389600.1	Wheat	extracellular, mitochondrion	2.69	1.36
TraesCS7D01G483800.1	Wheat	plastid	4.3	1.31
TraesCS1D01G222600.2	Wheat	plastid	3.76	1.13
KRH44352	Soybean	peroxisome	0.54	0.65
TraesCS5D01G166200.2	Wheat	mitochondrion, plastid	1.08	0.53

Protein Annotations

EnsemblPlants:TraesCS3D01G160900.1	EnsemblPlantsGene:TraesCS3D01G160900	Gene3D:3.40.50.720	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488
GO:GO:0008150	GO:GO:0008152	GO:GO:0051287	GO:GO:0055114	InterPro:D-isomer_DH_CS1	InterPro:D-isomer_DH_NAD-bd
InterPro:NAD(P)-bd_dom_sf	PANTHER:PTHR10996	PANTHER:PTHR10996:SF180	PFAM:PF02826	ScanProsite:PS00065	SUPFAM:SSF51735
MapMan:50.1.1	:	:	:	:	:

Description

No Description!

Coordinates

chr3D:-:131355744..131356386

Molecular Weight (calculated)

20017.3 Da

IEP (calculated)

5.252

GRAVY (calculated)

0.243

Length

186 amino acids

Sequence
(BLAST)

001: MADDAGYCFV VDIKFSGKRV AILGLGRIGL AIAKRAEAFG CSISYHSRSE KPFPNYKFFT NVVDLAANCD VLIVACSLNA ETHHMVNRKV MDALGPDGVL
101: INIGRGALVD EPELVSALLE KRLGAAGLDV FEHEPFAAEQ LFSLDNVVLV PHVGSDTEET CKAMADLVLK NLEAHALNKP LLTPVP

Best Arabidopsis Sequence Match ( AT1G12550.1 )
(BLAST)

001: MAESSEPPVV LLHRPPSLTF MDEILTREFR TLITDTSSSE SLPSFFPRHA SSARAFVISG RLPVTDELLS HLPSLQILVC TSVGIDHIDL AACKRRGIVI
101: TNAGNAFSDD VADCAVGLLI SVLRRIPAAD RYVRSGNWAK FGDFQLGSKV SGKRVGIVGL GSIGSFVAKR LESFGCVISY NSRSQKQSSP YRYYSDILSL
201: AENNDVLVLC CSLTDETHHI VNREVMELLG KDGVVINVGR GKLIDEKEMV KCLVDGVIGG AGLDVFENEP AVPQELFGLD NVVLSPHFAV ATPGSLDNVA
301: QIALANLKAF FSNRPLLSPV QLD

Arabidopsis Description

HPR3Glyoxylate/hydroxypyruvate reductase HPR3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LE33]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.