Factsheet for VIT_09s0002g04290.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

cytosol 3
mitochondrion 2
plastid 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_09s0002g04300.t01	Wine grape	cytosol	70.29	70.29
Solyc12g044250.1.1	Tomato	vacuole	69.97	69.52
PGSC0003DMT400019586	Potato	extracellular	69.65	69.21
GSMUA_Achr3P03420_001	Banana	cytosol	66.77	66.14
AT1G79870.1	Thale cress	cytosol	65.81	65.81
CDX67931	Canola	cytosol	65.5	65.5
Bra035206.1-P	Field mustard	cytosol	64.86	65.48
CDX87280	Canola	cytosol	64.86	65.48
Bra003537.1-P	Field mustard	cytosol	65.18	65.18
CDX79406	Canola	cytosol	65.18	65.18
CDY58781	Canola	cytosol	63.9	63.9
KRH09880	Soybean	cytosol	60.38	62.38
GSMUA_Achr3P31530_001	Banana	cytosol	60.38	59.81
TraesCS4B01G324200.1	Wheat	peroxisome	60.38	59.81
TraesCS3B01G180100.1	Wheat	cytosol, golgi, unclear	60.06	59.49
TraesCS3A01G153500.1	Wheat	peroxisome	60.38	59.43
KXG31500	Sorghum	cytosol	59.42	59.05
TraesCS5A01G496700.1	Wheat	cytosol, peroxisome, plastid	59.42	58.86
Os01t0228600-01	Rice	extracellular	55.59	55.06
Zm00001d030544_P001	Maize	cytosol, extracellular	54.95	53.75
VIT_02s0025g04750.t01	Wine grape	cytosol, plasma membrane	40.89	44.14
VIT_02s0025g04730.t01	Wine grape	cytosol	43.13	42.59
HORVU3Hr1G031200.3	Barley	cytosol, mitochondrion	60.06	38.68
VIT_15s0048g01330.t01	Wine grape	mitochondrion, peroxisome, plastid	43.13	29.28
VIT_03s0038g02510.t01	Wine grape	cytosol, peroxisome, plastid	26.2	21.24
VIT_18s0041g01830.t01	Wine grape	cytosol	22.36	20.41
VIT_14s0066g01320.t01	Wine grape	mitochondrion	22.68	18.54
VIT_09s0018g01870.t01	Wine grape	plastid	28.11	14.1
VIT_18s0001g09890.t01	Wine grape	plastid	26.52	13.72
VIT_03s0180g00130.t01	Wine grape	cytosol	27.48	13.17
TraesCS3D01G160900.1	Wheat	cytosol	6.39	10.75

Protein Annotations

EntrezGene:100246348	wikigene:100246348	Gene3D:3.40.50.720	MapMan:50.1.1	ProteinID:CBI36124	ProteinID:CBI36124.3
InterPro:D-isomer_2_OHA_DH_cat_dom	InterPro:D-isomer_DH_CS1	InterPro:D-isomer_DH_NAD-bd	UniProt:D7U0H8	EMBL:FN596494	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005829	GO:GO:0008150	GO:GO:0008152	GO:GO:0016491	GO:GO:0016616
GO:GO:0016618	GO:GO:0030267	GO:GO:0051287	GO:GO:0055114	EntrezGene:LOC100246348	wikigene:LOC100246348
InterPro:NAD(P)-bd_dom_sf	PFAM:PF00389	PFAM:PF02826	ScanProsite:PS00065	PANTHER:PTHR10996	PANTHER:PTHR10996:SF180
SUPFAM:SSF51735	SUPFAM:SSF52283	UniParc:UPI00015C888F	ArrayExpress:VIT_09s0002g04290	EnsemblPlantsGene:VIT_09s0002g04290	EnsemblPlants:VIT_09s0002g04290.t01
unigene:Vvi.20376	RefSeq:XP_002284520	RefSeq:XP_002284520.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr9:-:3925678..3932374

Molecular Weight (calculated)

34047.2 Da

IEP (calculated)

5.448

GRAVY (calculated)

0.105

Length

313 amino acids

Sequence
(BLAST)

001: MENICVLLTY PVPEYLVQKL EKRFTVFKFR EVASNPQLLR EISNSIRAIV GTSVCGADAG LIDALPKLEI VASYSVGFDK IDLVKCKERG ITVTNTPDVL
101: TDDVADSAIG LALATLRRMC VCDRFVRSGK WKKGDFELTT KFSGKSIGIV GLGRIGSAIA KRAEAFGSSI SYHSRSEKPE SNYKYYSNII DLATNCQILF
201: VACALTKETH HIVDRKVIDA LGPKGIIINI GRGAHIDEPE LVSALLEGRL AGAGLDVFEH EPEVPEELLG LENVVLQPHA GSDTVETSVA MSDLVIDNLE
301: ACFQNKPVLT PVI

Best Arabidopsis Sequence Match ( AT1G79870.1 )
(BLAST)

001: MESIGVLMMC PMSSYLENEL EKRFNLLRFW TSPEKSVLLE THRNSIRAVV GNASAGADAQ LISDLPNLEI VSSFSVGLDK IDLGKCKEKG IRVTNTPDVL
101: TEDVADLAIG LILALLRRLC ECDRYVRSGK WKQGEFQLTT KFSGKSVGII GLGRIGTAIA KRAEAFSCPI NYYSRTIKPD VAYKYYPTVV DLAQNSDILV
201: VACPLTEQTR HIVDRQVMDA LGAKGVLINI GRGPHVDEQE LIKALTEGRL GGAALDVFEQ EPHVPEELFG LENVVLLPHV GSGTVETRNA MADLVVGNLE
301: AHFSGKSLLT PVV

Arabidopsis Description

HPR2Glyoxylate/hydroxypyruvate reductase A HPR2 [Source:UniProtKB/Swiss-Prot;Acc:Q9CA90]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.