Factsheet for VIT_15s0048g01330.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, peroxisome, plastid

Predictor Summary:

plastid 3
mitochondrion 3
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P17980_001	Banana	cytosol	15.18	65.42
VIT_02s0025g04750.t01	Wine grape	cytosol, plasma membrane	40.13	63.79
Solyc01g093990.2.1	Tomato	cytosol	42.3	60.37
KRH48312	Soybean	cytosol	43.17	59.05
VIT_02s0025g04730.t01	Wine grape	cytosol	40.35	58.68
CDY17092	Canola	cytosol	13.45	58.49
GSMUA_Achr5P14430_001	Banana	mitochondrion	37.96	57.57
KRH48313	Soybean	cytosol	41.87	57.44
GSMUA_Achr5P14420_001	Banana	cytosol	41.0	57.27
Bra035498.1-P	Field mustard	cytosol	12.15	57.14
HORVU2Hr1G005210.2	Barley	mitochondrion	34.27	57.04
AT2G45630.2	Thale cress	plastid	41.65	56.8
HORVU4Hr1G086940.2	Barley	cytosol	15.84	56.59
CDY16011	Canola	cytosol, peroxisome, plastid	36.01	56.08
CDY57070	Canola	cytosol	39.05	55.9
TraesCS2A01G035500.1	Wheat	extracellular, mitochondrion	40.13	55.39
Bra026966.1-P	Field mustard	cytosol	28.42	54.81
TraesCS2D01G034700.1	Wheat	mitochondrion, plastid	39.7	54.79
CDY26572	Canola	cytosol	28.63	54.77
TraesCS2A01G035400.1	Wheat	mitochondrion	38.83	54.24
TraesCS2D01G034600.1	Wheat	mitochondrion	38.39	53.64
KRH48311	Soybean	cytosol	38.83	53.59
Os04t0107200-01	Rice	mitochondrion	38.18	53.5
CDY54697	Canola	mitochondrion	17.14	53.38
TraesCS2B01G048500.1	Wheat	cytosol	38.39	52.52
Bra019774.1-P	Field mustard	cytosol	39.26	52.46
CDX98054	Canola	cytosol	39.26	52.46
Zm00001d024906_P001	Maize	cytosol	37.31	52.28
Os04t0107500-01	Rice	plasma membrane	35.57	51.9
TraesCS2A01G034900.1	Wheat	mitochondrion	36.44	51.85
EES11740	Sorghum	mitochondrion	37.09	51.82
TraesCS2B01G048000.1	Wheat	mitochondrion	36.23	51.54
KRH48310	Soybean	cytosol	37.31	51.5
OQU81061	Sorghum	plastid	35.57	51.41
EES10352	Sorghum	cytosol, mitochondrion	37.31	50.89
TraesCS7A01G538500.1	Wheat	cytosol	37.96	50.87
OQU81058	Sorghum	cytosol	36.88	50.75
TraesCS2D01G034100.1	Wheat	mitochondrion	35.57	50.62
HORVU2Hr1G005230.1	Barley	cytosol, mitochondrion	37.53	50.44
Os11t0229100-01	Rice	extracellular	15.18	50.36
CDY26571	Canola	plastid	32.32	50.34
TraesCS2A01G034800.1	Wheat	cytosol, plasma membrane, plastid	34.49	50.32
TraesCS2B01G048100.1	Wheat	plastid	37.53	50.29
TraesCS7B01G456600.1	Wheat	cytosol, plastid	37.53	50.29
Os04t0106400-01	Rice	cytosol, mitochondrion, plastid	35.79	50.15
EES11738	Sorghum	cytosol	36.66	50.0
TraesCS2B01G047900.1	Wheat	cytosol, peroxisome, plastid	34.27	50.0
Zm00001d024907_P001	Maize	mitochondrion	36.44	49.85
Zm00001d008883_P001	Maize	mitochondrion	35.36	49.39
EES10400	Sorghum	cytosol	36.01	49.11
TraesCS2D01G034000.1	Wheat	cytosol, peroxisome, plastid	33.62	48.59
CDY16012	Canola	cytosol, nucleus, peroxisome	25.38	48.55
Os04t0107300-01	Rice	mitochondrion, plasma membrane	34.27	48.47
KRH65201	Soybean	plastid	30.15	48.43
TraesCS1B01G004500.1	Wheat	extracellular, golgi, mitochondrion	33.62	47.99
TraesCSU01G226500.1	Wheat	extracellular, golgi, mitochondrion	33.62	47.99
Zm00001d018790_P001	Maize	extracellular, plasma membrane	32.54	47.92
TraesCS2D01G030900.1	Wheat	cytosol	32.75	47.78
KRH65202	Soybean	cytosol	23.21	47.56
OQU88433	Sorghum	cytosol	32.97	47.35
Zm00001d004451_P001	Maize	cytosol	34.27	46.88
TraesCS2A01G035000.2	Wheat	mitochondrion, plastid	36.44	46.41
TraesCS2A01G028600.1	Wheat	extracellular, plasma membrane	33.41	45.97
VIT_09s0002g04300.t01	Wine grape	cytosol	31.02	45.69
TraesCS2D01G034300.1	Wheat	plastid	35.79	45.58
HORVU2Hr1G005140.13	Barley	endoplasmic reticulum, extracellular, mitochondrion	34.71	44.82
VIT_09s0002g04290.t01	Wine grape	cytosol, plastid	29.28	43.13
HORVU2Hr1G005150.2	Barley	plastid	29.07	37.53
Bra026967.1-P	Field mustard	cytosol, nucleus, plastid	30.15	35.01
CDY16010	Canola	cytosol, nucleus, plastid	38.83	32.49
CDY26570	Canola	cytosol	28.63	29.33
VIT_18s0041g01830.t01	Wine grape	cytosol	15.62	20.99
VIT_14s0066g01320.t01	Wine grape	mitochondrion	17.35	20.89
VIT_03s0038g02510.t01	Wine grape	cytosol, peroxisome, plastid	17.14	20.47
VIT_18s0001g09890.t01	Wine grape	plastid	18.22	13.88
VIT_09s0018g01870.t01	Wine grape	plastid	17.79	13.14
VIT_03s0180g00130.t01	Wine grape	cytosol	18.22	12.86

Protein Annotations

EntrezGene:100262633	wikigene:100262633	EntrezGene:100853756	wikigene:100853756	Gene3D:3.40.50.720	MapMan:50.1.1
ProteinID:CCB61367	ProteinID:CCB61367.1	InterPro:D-isomer_2_OHA_DH_cat_dom	InterPro:D-isomer_DH_NAD-bd	UniProt:F6I350	EMBL:FN596739
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0008150	GO:GO:0008152	GO:GO:0016491
GO:GO:0016616	GO:GO:0016618	GO:GO:0030267	GO:GO:0051287	GO:GO:0055114	EntrezGene:LOC100262633
wikigene:LOC100262633	EntrezGene:LOC100853756	wikigene:LOC100853756	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00389	PFAM:PF02826
PANTHER:PTHR10996	PANTHER:PTHR10996:SF155	SUPFAM:SSF51735	SUPFAM:SSF52283	UniParc:UPI0002109EF7	ArrayExpress:VIT_15s0048g01330
EnsemblPlantsGene:VIT_15s0048g01330	EnsemblPlants:VIT_15s0048g01330.t01	unigene:Vvi.25658	RefSeq:XP_003633919	RefSeq:XP_003633919.1	RefSeq:XP_003633920
RefSeq:XP_003633920.1	RefSeq:XP_003633932	RefSeq:XP_003633932.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr15:-:15460995..15466578

Molecular Weight (calculated)

50357.4 Da

IEP (calculated)

7.200

GRAVY (calculated)

0.203

Length

461 amino acids

Sequence
(BLAST)

001: MADQLPQVLV LRPPPVFTLF ETQFSQKFHF LRAWESPLPT AEFLATHAAS VKAVLCSGST PITADILRHL PSLQLIVTTS AGLNHINLPE CRRRSISIAN
101: AGEIFSDDCA DLAVGLLMDV LRKISAADRF IRAGLWPIRG DYPLGSKLLI LKPPSLFSDF QYKFSPKFQL LKAWESPLPT TLFLTTHAHS VKAVVSSSSS
201: PITSDILRHL PSLQLVVATT VGLNQIDLPE CRRRGISIAN AGKILSEDCA DMGVGLFIDV LKKISAGDRF VRSGLWPIQK DFPLGSKLGG KRVGIVGLGS
301: IGLEVAKRLE AFGCIILYNS RRKKANISYP FYSNVCELAA NSNALIICCA LTDETRHMIN KEVMKALGKE GVIINIGRGA IIDEKELVQC LVQGEIGGAG
401: LDVFENEPDV PKELFTLDNV VLSPHVAVFT QESFSDLYDL MVGNLEAFFS NKTLLSPVLD E

Best Arabidopsis Sequence Match ( AT2G45630.2 )
(BLAST)

001: MQNRSISQVA TMATSSSTEK LPRVLIVKRP DAMAVLGDGF VASTKFEILK AFESPLPLPE FLAYHSDSIS AIIAPVAAPV TADLIRILPN LRLVVTTSAG
101: VDHVDLVECR RRGISVANAG SSFSEDVADT AVGLLIDVFR RISAANRFVK QRFWPLKGDY PLGSKLGRKR IGIVGLGSIG SKVATRLDAF GCQISYSSRN
201: RKPYDVPYHY YMDIEEMAAN SDALIICCEL NEKTLRLINK DVLSALGKRG VIVNVARGAI IDEEEMVRCL REGEIGGAGL DVFEDEPNVP KELFELDNVV
301: FSPHSAFMTL EGLEELGKVV VGNIEAFFSN KPLLTPVL

Arabidopsis Description

D-isomer specific 2-hydroxyacid dehydrogenase family protein [Source:UniProtKB/TrEMBL;Acc:Q67Y01]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.