CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 2
cytosol 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra026967.1-P	Field mustard	cytosol, nucleus, plastid	67.33	93.45
CDY26570	Canola	cytosol	76.22	93.33
CDY26572	Canola	cytosol	36.84	84.23
CDY54697	Canola	mitochondrion	22.14	82.43
CDY16011	Canola	cytosol, peroxisome, plastid	42.65	79.39
CDY16012	Canola	cytosol, nucleus, peroxisome	34.12	78.01
CDY17092	Canola	cytosol	14.88	77.36
CDY26571	Canola	plastid	41.38	77.03
CDY57070	Canola	cytosol	44.28	75.78
CDX98054	Canola	cytosol	45.55	72.75
AT1G12550.1	Thale cress	cytosol	41.92	71.52
GSMUA_Achr4P17980_001	Banana	cytosol	11.8	60.75
VIT_02s0025g04750.t01	Wine grape	cytosol, plasma membrane	28.68	54.48
HORVU2Hr1G005210.2	Barley	mitochondrion	27.22	54.15
PGSC0003DMT400058518	Potato	cytosol	13.61	53.96
GSMUA_Achr5P14420_001	Banana	cytosol	31.76	53.03
KRH48312	Soybean	cytosol	32.3	52.82
Os04t0107500-01	Rice	plasma membrane	29.95	52.22
TraesCS2D01G034000.1	Wheat	cytosol, peroxisome, plastid	30.13	52.04
PGSC0003DMT400058520	Potato	cytosol	30.67	52.0
GSMUA_Achr5P14430_001	Banana	mitochondrion	28.49	51.64
TraesCS2A01G034800.1	Wheat	cytosol, plasma membrane, plastid	29.4	51.27
TraesCS2B01G047900.1	Wheat	cytosol, peroxisome, plastid	29.4	51.27
TraesCS2A01G035500.1	Wheat	extracellular, mitochondrion	31.03	51.2
KRH48313	Soybean	cytosol	31.22	51.19
CDX67931	Canola	cytosol	29.04	51.12
TraesCS2D01G030900.1	Wheat	cytosol	29.22	50.95
TraesCS2A01G035400.1	Wheat	mitochondrion	30.49	50.91
TraesCS2D01G034600.1	Wheat	mitochondrion	30.49	50.91
CDX79406	Canola	cytosol	28.86	50.8
VIT_02s0025g04730.t01	Wine grape	cytosol	29.04	50.47
Os04t0107200-01	Rice	mitochondrion	29.95	50.15
Zm00001d018790_P001	Maize	extracellular, plasma membrane	28.31	49.84
TraesCS2D01G034700.1	Wheat	mitochondrion, plastid	30.13	49.7
Os04t0106400-01	Rice	cytosol, mitochondrion, plastid	29.58	49.54
OQU81061	Sorghum	plastid	28.68	49.53
KRH48310	Soybean	cytosol	29.95	49.4
KRH48311	Soybean	cytosol	29.95	49.4
CDX87280	Canola	cytosol	27.59	49.03
HORVU4Hr1G086940.2	Barley	cytosol	11.43	48.84
OQU88433	Sorghum	cytosol	28.31	48.6
EES11740	Sorghum	mitochondrion	29.04	48.48
KRH65201	Soybean	plastid	25.23	48.43
OQU81058	Sorghum	cytosol	29.4	48.36
TraesCS7A01G538500.1	Wheat	cytosol	30.13	48.26
TraesCS7B01G456600.1	Wheat	cytosol, plastid	30.13	48.26
CDY58781	Canola	cytosol	27.4	48.24
Zm00001d008883_P001	Maize	mitochondrion	28.86	48.18
TraesCS2B01G048500.1	Wheat	cytosol	29.4	48.07
TraesCS2A01G028600.1	Wheat	extracellular, plasma membrane	29.22	48.06
Zm00001d024906_P001	Maize	cytosol	28.49	47.72
TraesCS2B01G048000.1	Wheat	mitochondrion	27.95	47.53
EES11738	Sorghum	cytosol	29.04	47.34
HORVU2Hr1G005230.1	Barley	cytosol, mitochondrion	29.4	47.23
TraesCS2A01G034900.1	Wheat	mitochondrion	27.77	47.22
TraesCS1B01G004500.1	Wheat	extracellular, golgi, mitochondrion	27.59	47.06
TraesCSU01G226500.1	Wheat	extracellular, golgi, mitochondrion	27.59	47.06
EES10352	Sorghum	cytosol, mitochondrion	28.86	47.04
TraesCS2D01G034100.1	Wheat	mitochondrion	27.59	46.91
TraesCS2B01G048100.1	Wheat	plastid	29.22	46.8
KRH65202	Soybean	cytosol	19.06	46.67
Zm00001d024907_P001	Maize	mitochondrion	28.49	46.59
HORVU2Hr1G005140.13	Barley	endoplasmic reticulum, extracellular, mitochondrion	30.13	46.5
Os11t0229100-01	Rice	extracellular	11.62	46.04
Os04t0107300-01	Rice	mitochondrion, plasma membrane	27.22	46.01
EES10400	Sorghum	cytosol	27.95	45.56
Zm00001d004451_P001	Maize	cytosol	27.59	45.1
TraesCS2A01G035000.2	Wheat	mitochondrion, plastid	29.22	44.48
TraesCS2D01G034300.1	Wheat	plastid	28.68	43.65
VIT_15s0048g01330.t01	Wine grape	mitochondrion, peroxisome, plastid	32.49	38.83
Solyc03g120660.2.1	Tomato	cytosol	9.8	34.18
HORVU2Hr1G005150.2	Barley	plastid	21.6	33.33
CDY57736	Canola	plastid	14.88	21.52
CDY07405	Canola	cytosol	15.06	21.5
CDX85582	Canola	mitochondrion	14.88	21.41
CDY04198	Canola	cytosol	15.06	21.07
CDX68275	Canola	mitochondrion	14.16	20.97
CDY50445	Canola	mitochondrion	14.16	20.91
CDX91020	Canola	mitochondrion	14.52	20.83
CDY09885	Canola	mitochondrion	13.97	20.1
CDX69558	Canola	mitochondrion	13.97	20.05
CDX96054	Canola	mitochondrion	15.24	18.34
CDX96754	Canola	plastid	16.7	14.81
CDX83893	Canola	plastid	16.7	14.79
CDX76268	Canola	plastid	15.61	14.33
CDY49286	Canola	plastid	15.43	14.21
CDX72462	Canola	plastid	15.43	14.21
CDX82295	Canola	plastid	15.06	14.14
CDY22972	Canola	plastid	15.06	14.14
CDX75409	Canola	plastid	15.06	13.93
CDX69034	Canola	plastid	15.06	13.13
CDY01876	Canola	endoplasmic reticulum, plasma membrane	14.88	11.83
CDY12275	Canola	cytosol	6.53	10.53
CDY57737	Canola	cytosol	0.54	1.75

Protein Annotations

MapMan:15.5.32	Gene3D:3.40.50.720	Gene3D:4.10.280.10	GO:A0A078FNK1	UniProt:A0A078FNK1	EnsemblPlants:CDY16010
ProteinID:CDY16010	ProteinID:CDY16010.1	ncoils:Coil	InterPro:D-isomer_2_OHA_DH_cat_dom	InterPro:D-isomer_DH_NAD-bd	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0008150	GO:GO:0008152
GO:GO:0016616	GO:GO:0046983	GO:GO:0051287	GO:GO:0055114	EnsemblPlantsGene:GSBRNA2T00090396001	InterPro:HLH_DNA-bd_sf
InterPro:IPR011598	InterPro:IPR036638	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00010	PFAM:PF00389	PFAM:PF02826
PFscan:PS50888	PANTHER:PTHR10996	PANTHER:PTHR10996:SF179	SMART:SM00353	SUPFAM:SSF47459	SUPFAM:SSF51735
SUPFAM:SSF52283	UniParc:UPI0004EDD317	InterPro:bHLH_dom	SEG:seg	:	:

Description

BnaC08g41130DBnaC08g41130D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FNK1]

Coordinates

chrLK032060:+:178908..183407

Molecular Weight (calculated)

61102.6 Da

IEP (calculated)

7.378

GRAVY (calculated)

-0.101

Length

551 amino acids

Sequence
(BLAST)

001: MDFASSSLFT ADFAYENELD LSSLITPSTF IPFQEPNPSI PTIHCAGAEN DGRQRIRETT TTDEITNEDV EPKNKKAKRR EIERQRRQEV TSLFKNLRYI
101: LPSQYIKGKR SSSDHVQEAV NYIKDLEKKI KEISEKRDRI KRSISHSSST GECSIRSLES SYCSCDGYTH IDVKVRTCLV GIEIVASCCF TQESCLSSIL
201: QLLIQEQCLD VVSCISSRLH PRFIHTIVCE SMAEESPLVL VHRPPTMKYM DEPLTRYYRI LTTHTSSDPL PVFLSRHASS VRAVVSIGRF KIDADFLSRL
301: PSLQLIVCTS VGTDHVDLPE CNRRGIAVTN AGGAYSEDVA DYAVGLLISF LRRIPAADRY VRSGKWARCG EFQLGIKLSG KRIGILGLGS IGSLIAKRLE
401: PFGCIISYNS TRQKQSIPYL YYPDVVSLAA NNDVIVLCCA LNDQTRHIVN REVMEALGKK GIIINVGRGG LIDEKEMVKC LVEGVIGGAG LDAFEKEPGV
501: PVELFGLDNV VLSPHCAIAT PGSFDNVVEL ALANLKAFFS NQPLISPVRL N

Best Arabidopsis Sequence Match ( AT1G12550.1 )
(BLAST)

001: MAESSEPPVV LLHRPPSLTF MDEILTREFR TLITDTSSSE SLPSFFPRHA SSARAFVISG RLPVTDELLS HLPSLQILVC TSVGIDHIDL AACKRRGIVI
101: TNAGNAFSDD VADCAVGLLI SVLRRIPAAD RYVRSGNWAK FGDFQLGSKV SGKRVGIVGL GSIGSFVAKR LESFGCVISY NSRSQKQSSP YRYYSDILSL
201: AENNDVLVLC CSLTDETHHI VNREVMELLG KDGVVINVGR GKLIDEKEMV KCLVDGVIGG AGLDVFENEP AVPQELFGLD NVVLSPHFAV ATPGSLDNVA
301: QIALANLKAF FSNRPLLSPV QLD

Arabidopsis Description

HPR3Glyoxylate/hydroxypyruvate reductase HPR3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LE33]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.