Factsheet for PGSC0003DMT400058518

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
nucleus 1
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P17980_001	Banana	cytosol	44.6	57.94
Bra035498.1-P	Field mustard	cytosol	38.13	54.08
CDY17092	Canola	cytosol	40.29	52.83
HORVU4Hr1G086940.2	Barley	cytosol	43.88	47.29
CDY54697	Canola	mitochondrion	44.6	41.89
PGSC0003DMT400058520	Potato	cytosol	87.05	37.23
HORVU2Hr1G005210.2	Barley	mitochondrion	54.68	27.44
TraesCS2A01G034800.1	Wheat	cytosol, plasma membrane, plastid	57.55	25.32
TraesCS2B01G047900.1	Wheat	cytosol, peroxisome, plastid	57.55	25.32
GSMUA_Achr5P14420_001	Banana	cytosol	58.99	24.85
TraesCS2D01G034000.1	Wheat	cytosol, peroxisome, plastid	56.83	24.76
TraesCS2D01G030900.1	Wheat	cytosol	55.4	24.37
CDY16011	Canola	cytosol, peroxisome, plastid	51.8	24.32
Zm00001d018790_P001	Maize	extracellular, plasma membrane	54.68	24.28
CDY57070	Canola	cytosol	55.4	23.91
Os04t0107500-01	Rice	plasma membrane	53.96	23.73
OQU81061	Sorghum	plastid	53.96	23.51
OQU81058	Sorghum	cytosol	56.12	23.28
TraesCS2D01G034700.1	Wheat	mitochondrion, plastid	55.4	23.05
TraesCS2A01G035500.1	Wheat	extracellular, mitochondrion	55.4	23.05
TraesCS2A01G035400.1	Wheat	mitochondrion	54.68	23.03
HORVU2Hr1G005230.1	Barley	cytosol, mitochondrion	56.12	22.74
TraesCS2D01G034600.1	Wheat	mitochondrion	53.96	22.73
HORVU2Hr1G005140.13	Barley	endoplasmic reticulum, extracellular, mitochondrion	58.27	22.69
Zm00001d024906_P001	Maize	cytosol	53.24	22.49
Bra019774.1-P	Field mustard	cytosol	55.4	22.32
CDX98054	Canola	cytosol	55.4	22.32
TraesCS2B01G048500.1	Wheat	cytosol	53.96	22.26
OQU88433	Sorghum	cytosol	51.08	22.12
TraesCS2A01G028600.1	Wheat	extracellular, plasma membrane	53.24	22.09
TraesCSU01G226500.1	Wheat	extracellular, golgi, mitochondrion	51.08	21.98
TraesCS1B01G004500.1	Wheat	extracellular, golgi, mitochondrion	51.08	21.98
Zm00001d024907_P001	Maize	mitochondrion	53.24	21.96
TraesCS2B01G048000.1	Wheat	mitochondrion	51.08	21.91
EES10400	Sorghum	cytosol	53.24	21.89
EES10352	Sorghum	cytosol, mitochondrion	53.24	21.89
Os04t0107200-01	Rice	mitochondrion	51.8	21.88
EES11740	Sorghum	mitochondrion	51.8	21.82
TraesCS2A01G034900.1	Wheat	mitochondrion	50.36	21.6
EES11738	Sorghum	cytosol	51.8	21.3
TraesCS2D01G034100.1	Wheat	mitochondrion	49.64	21.3
Os04t0106400-01	Rice	cytosol, mitochondrion, plastid	50.36	21.28
PGSC0003DMT400019586	Potato	extracellular	48.2	21.27
TraesCS7A01G538500.1	Wheat	cytosol	52.52	21.22
PGSC0003DMT400019584	Potato	cytosol	47.48	21.09
TraesCS7B01G456600.1	Wheat	cytosol, plastid	51.8	20.93
Os04t0107300-01	Rice	mitochondrion, plasma membrane	48.92	20.86
Zm00001d004451_P001	Maize	cytosol	50.36	20.77
PGSC0003DMT400085920	Potato	mitochondrion	27.34	20.65
GSMUA_Achr5P14430_001	Banana	mitochondrion	43.17	19.74
Zm00001d008883_P001	Maize	mitochondrion	46.76	19.7
Bra026967.1-P	Field mustard	cytosol, nucleus, plastid	55.4	19.4
TraesCS2B01G048100.1	Wheat	plastid	47.48	19.19
HORVU2Hr1G005150.2	Barley	plastid	48.2	18.77
TraesCS2D01G034300.1	Wheat	plastid	48.2	18.51
TraesCS2A01G035000.2	Wheat	mitochondrion, plastid	47.48	18.23
CDY26571	Canola	plastid	34.53	16.22
CDY26572	Canola	cytosol	28.06	16.18
Bra026966.1-P	Field mustard	cytosol	27.34	15.9
CDY16010	Canola	cytosol, nucleus, plastid	53.96	13.61
PGSC0003DMT400015828	Potato	cytosol	33.81	12.18
PGSC0003DMT400071027	Potato	cytosol	23.74	10.71
CDY26570	Canola	cytosol	32.37	10.0
PGSC0003DMT400001303	Potato	mitochondrion	22.3	8.14
CDY16012	Canola	cytosol, nucleus, peroxisome	12.95	7.47
PGSC0003DMT400046698	Potato	plastid	27.34	6.33
PGSC0003DMT400059818	Potato	plastid	26.62	6.22
PGSC0003DMT400023675	Potato	plastid	26.62	5.8
PGSC0003DMT400068907	Potato	cytosol	2.16	1.99
Os11t0229100-01	Rice	extracellular	0.0	0.0

Protein Annotations

EnsemblPlants:PGSC0003DMT400058518	EnsemblPlantsGene:PGSC0003DMG400022729	Gene3D:3.40.50.720	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488
GO:GO:0008150	GO:GO:0008152	GO:GO:0051287	GO:GO:0055114	InterPro:D-isomer_DH_NAD-bd	InterPro:NAD(P)-bd_dom_sf
PANTHER:PTHR10996	PANTHER:PTHR10996:SF179	PFAM:PF02826	PGSC:PGSC0003DMG400022729	SUPFAM:SSF51735	UniParc:UPI000294D911
UniProt:M1C2S9	MapMan:50.1.1	:	:	:	:

Description

Glycerate dehydrogenase [Source:PGSC_GENE;Acc:PGSC0003DMG400022729]

Coordinates

chr8:+:53724508..53726885

Molecular Weight (calculated)

15497.6 Da

IEP (calculated)

4.649

GRAVY (calculated)

0.060

Length

139 amino acids

Sequence
(BLAST)

001: MKPNVQFRFH SNIHDLAINS DVLILCCSLT KETHHIVGKE VLTALGKEGV VINVGRGALV DEKELVQFLK RGEIGGAGLD VFENEPYVPK ELFVLDNVVL
101: SPHIAVSTPE SFEALEELFT YNIQAFFSNK PLQAQIEYD

Best Arabidopsis Sequence Match ( AT1G12550.1 )
(BLAST)

001: MAESSEPPVV LLHRPPSLTF MDEILTREFR TLITDTSSSE SLPSFFPRHA SSARAFVISG RLPVTDELLS HLPSLQILVC TSVGIDHIDL AACKRRGIVI
101: TNAGNAFSDD VADCAVGLLI SVLRRIPAAD RYVRSGNWAK FGDFQLGSKV SGKRVGIVGL GSIGSFVAKR LESFGCVISY NSRSQKQSSP YRYYSDILSL
201: AENNDVLVLC CSLTDETHHI VNREVMELLG KDGVVINVGR GKLIDEKEMV KCLVDGVIGG AGLDVFENEP AVPQELFGLD NVVLSPHFAV ATPGSLDNVA
301: QIALANLKAF FSNRPLLSPV QLD

Arabidopsis Description

HPR3Glyoxylate/hydroxypyruvate reductase HPR3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LE33]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.