Factsheet for PGSC0003DMT400046698

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g112070.2.1	Tomato	plastid	98.17	98.17
PGSC0003DMT400059818	Potato	plastid	86.5	87.23
KRH35731	Soybean	nucleus	83.17	84.01
HORVU2Hr1G113180.3	Barley	cytosol	63.33	83.89
KRG91030	Soybean	endoplasmic reticulum	82.83	83.53
VIT_03s0180g00130.t01	Wine grape	cytosol	85.33	78.41
EES12983	Sorghum	plastid	79.33	76.77
Zm00001d026472_P001	Maize	plastid	78.0	76.47
Os04t0650800-01	Rice	plastid	77.83	76.18
Zm00001d002051_P001	Maize	plastid	79.0	75.72
GSMUA_Achr4P11440_001	Banana	plastid	71.67	75.57
TraesCS2A01G508900.1	Wheat	plastid	76.83	74.84
GSMUA_Achr4P04100_001	Banana	plastid	71.33	73.79
PGSC0003DMT400023675	Potato	plastid	74.67	70.22
PGSC0003DMT400019586	Potato	extracellular	14.5	27.62
PGSC0003DMT400058518	Potato	cytosol	6.33	27.34
PGSC0003DMT400019584	Potato	cytosol	14.0	26.84
PGSC0003DMT400015828	Potato	cytosol	16.83	26.17
PGSC0003DMT400071027	Potato	cytosol	13.17	25.65
PGSC0003DMT400085920	Potato	mitochondrion	7.83	25.54
PGSC0003DMT400058520	Potato	cytosol	13.5	24.92
PGSC0003DMT400001303	Potato	mitochondrion	14.33	22.57
PGSC0003DMT400068907	Potato	cytosol	4.33	17.22

Protein Annotations

KEGG:00260+1.1.1.95	KEGG:00270+3.3.1.1	KEGG:00680+1.1.1.95	EntrezGene:102588117	Gene3D:3.30.1330.90	Gene3D:3.30.70.260
Gene3D:3.40.50.720	MapMan:4.1.4.1.1	InterPro:ACT_dom	InterPro:ASB_dom_sf	InterPro:Ado_hCys_hydrolase_NAD-bd	InterPro:D-isomer_2_OHA_DH_cat_dom
InterPro:D-isomer_DH_CS	InterPro:D-isomer_DH_CS1	InterPro:D-isomer_DH_NAD-bd	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0004617	GO:GO:0005488	GO:GO:0006564	GO:GO:0008150	GO:GO:0008152	GO:GO:0008652
GO:GO:0009058	GO:GO:0009987	GO:GO:0016491	GO:GO:0016616	GO:GO:0051287	GO:GO:0055114
InterPro:IPR002912	InterPro:IPR029009	UniProt:M1BJG9	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00389	PFAM:PF01842
PFAM:PF02826	InterPro:PGDH	EnsemblPlantsGene:PGSC0003DMG400018130	PGSC:PGSC0003DMG400018130	EnsemblPlants:PGSC0003DMT400046698	ScanProsite:PS00065
ScanProsite:PS00670	ScanProsite:PS00671	PFscan:PS51671	PANTHER:PTHR42938	PANTHER:PTHR42938:SF14	SMART:SM00997
SUPFAM:SSF143548	SUPFAM:SSF51735	SUPFAM:SSF52283	SUPFAM:SSF55021	TIGRFAMs:TIGR01327	UniParc:UPI0002967854
RefSeq:XP_006344487.1	SEG:seg	:	:	:	:

Description

D-3-phosphoglycerate dehydrogenase [Source:PGSC_GENE;Acc:PGSC0003DMG400018130]

Coordinates

chr3:-:51857161..51861663

Molecular Weight (calculated)

63354.9 Da

IEP (calculated)

7.210

GRAVY (calculated)

0.181

Length

600 amino acids

Sequence
(BLAST)

001: MAASASSTML LSSKSSRASL SWKNQFASTS VFRVSGVTLP RRSLRQCPWF IVFSMDAKPT VLVAEKLGEA GLKLLKEFAN VDCSYNLSPE ELCTKISLCD
101: ALVVRSGTKV TREIFESSGG RLKVVGRAGV GIDNVDLAAA TEHGCLVVNA PTANTVAAAE HGIALLTAMA RNVAQADASV KAGKWLRNKY VGVSLVGKTL
201: AVMGFGKVGS EVARRAKGLG MHVIAHDPYA PADRARAIGV QLVSFDEALA SADFISLHMP LTPATKQILN DETFAKMKKG VRIVNVARGG VIDEEALVRA
301: LDAGIVAQAA LDVFTVEPPP KDSKLIQHEN VTATPHLGAS TTEAQEGVAI EVAEAVVGAL KGELSATAVN APMVPAEVLL ELKPFVVLAE KLGRLAVQLV
401: AGGSGVKSVK VTYGSARAPD DLDTRLLRAM ITKGMIEPIS SVFINLVNAD FTAKQRGLQI SEERLLLDGS PESPVEFIQV QIANVESKFA SAISDSGEIR
501: VEGRVKDGVP HLTKVGSFEV DVSLEGSIIL CSQVDQPGMI GKVGSVLGEE NVNVSFMSVG RVAPRKQAVM AIGVDEQPSK ESLKRIGEIP AIQEFVYLGL

Best Arabidopsis Sequence Match ( AT4G34200.1 )
(BLAST)

001: MSATAAASSS IAVATNSLRN VTLSSRSPLP SAISVAFPSR GRNTLQRRLV LVSCSTGDGS KPTILVAEKL GDAGIKLLED VANVDCSYNM TPEELNIKIS
101: LCDALIVRSG TKVGREVFES SHGRLKVVGR AGVGIDNVDL SAATEFGCLV VNAPTANTIA AAEHGIALMA AMARNVAQAD ASVKAGEWKR NKYVGVSLVG
201: KTLAVLGFGK VGTEVARRAK GLGMRVIAHD PYAPADRAHA IGVDLVSFDE ALATADFISL HMPLTPTTSK ILNDETFAKM KKGVRIVNVA RGGVIDEDAL
301: VRALDAGIVA QAALDVFTKE PPAKDSKLVQ HERVTVTPHL GASTMEAQEG VAIEIAEAVV GALNGELAAT AVNAPMVSAE VLTELKPYVV LAEKLGRLAV
401: QLVAGGSGVK NAKITYASAR ATDDLDTRLL RAMITKGIIE PISDVYVNLV NADFTAKQRG LRLSEERVLL DGSPESPLET ITVQLSNVES KFASSLSESG
501: EVKVEGKVKD GVPHLTKVGS FEVDVTLEGS IILCRQVDQP GMIGTVGSIL GESNVNVNFM SVGRIAPRKQ AIMAIGVDDI PSKETLKKIG EIPAVEEFVF
601: LKL

Arabidopsis Description

PGDH1D-3-phosphoglycerate dehydrogenase [Source:UniProtKB/TrEMBL;Acc:A0A178UWV4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.