Factsheet for Zm00001d002051_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	mitochondrion

extracellular: 20408568
plastid: 22065420
plastid: 23198870
mitochondrion: 27297264

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES12983	Sorghum	plastid	96.01	96.94
Zm00001d026472_P001	Maize	plastid	92.97	95.1
Os04t0650800-01	Rice	plastid	90.42	92.33
HORVU2Hr1G113180.3	Barley	cytosol	66.61	92.05
TraesCS2A01G508900.1	Wheat	plastid	84.66	86.04
GSMUA_Achr4P11440_001	Banana	plastid	73.64	81.02
KRG91030	Soybean	endoplasmic reticulum	76.52	80.5
CDY57737	Canola	cytosol	21.73	79.53
KRH35731	Soybean	nucleus	75.4	79.46
Solyc03g112070.2.1	Tomato	plastid	76.04	79.33
PGSC0003DMT400046698	Potato	plastid	75.72	79.0
PGSC0003DMT400059818	Potato	plastid	75.08	78.99
Solyc10g049890.1.1	Tomato	plastid	74.76	78.66
GSMUA_Achr4P04100_001	Banana	plastid	72.36	78.1
CDX82295	Canola	plastid	73.16	78.02
AT3G19480.1	Thale cress	plastid	73.16	77.89
CDY22972	Canola	plastid	73.0	77.85
VIT_18s0001g09890.t01	Wine grape	plastid	75.24	77.85
Bra001747.1-P	Field mustard	plastid	72.52	77.34
CDX75409	Canola	plastid	73.16	76.85
CDY49286	Canola	plastid	72.84	76.25
CDX72462	Canola	plastid	72.84	76.25
Bra017637.1-P	Field mustard	plastid	72.84	76.25
CDX76268	Canola	plastid	73.0	76.17
Bra034616.1-P	Field mustard	plastid	72.84	75.87
AT4G34200.1	Thale cress	plastid	72.84	75.62
VIT_03s0180g00130.t01	Wine grape	cytosol	78.43	75.19
CDY57736	Canola	plastid	44.89	73.75
Bra011506.1-P	Field mustard	plastid	72.84	73.43
CDX69034	Canola	plastid	73.32	72.63
Zm00001d046923_P001	Maize	plastid	67.73	71.99
Zm00001d032114_P001	Maize	plastid	71.09	67.53
Zm00001d008883_P001	Maize	mitochondrion	16.77	31.82
Zm00001d018790_P001	Maize	extracellular, plasma membrane	15.5	30.99
Zm00001d024906_P001	Maize	cytosol	14.86	28.27
Zm00001d005489_P006	Maize	mitochondrion	16.77	26.85
Zm00001d053924_P001	Maize	cytosol	9.74	25.85
Zm00001d014163_P001	Maize	mitochondrion	9.9	25.62
Zm00001d024907_P001	Maize	mitochondrion	13.58	25.22
Zm00001d004451_P001	Maize	cytosol	13.58	25.22
Zm00001d006877_P001	Maize	cytosol, mitochondrion, plastid	11.34	25.18
Zm00001d030544_P001	Maize	cytosol, extracellular	12.78	25.0
Zm00001d011368_P001	Maize	cytosol	11.5	24.91
Zm00001d011367_P001	Maize	cytosol	11.5	24.91
Zm00001d014919_P002	Maize	mitochondrion	16.29	23.61
Zm00001d004323_P001	Maize	mitochondrion	5.43	23.45
Zm00001d045965_P001	Maize	mitochondrion	13.26	22.07
Zm00001d019818_P001	Maize	mitochondrion	5.11	22.07
Zm00001d033618_P001	Maize	cytosol	11.02	17.92
Zm00001d017801_P001	Maize	mitochondrion	3.83	13.95

Protein Annotations

KEGG:00260+1.1.1.95	KEGG:00270+3.3.1.1	KEGG:00680+1.1.1.95	EntrezGene:103645840	Gene3D:3.30.1330.90	Gene3D:3.30.70.260
Gene3D:3.40.50.720	MapMan:4.1.4.1.1	UniProt:A0A1D6DW07	InterPro:ACT_dom	InterPro:ASB_dom_sf	InterPro:Ado_hCys_hydrolase_NAD-bd
InterPro:D-isomer_2_OHA_DH_cat_dom	InterPro:D-isomer_DH_CS	InterPro:D-isomer_DH_CS1	InterPro:D-isomer_DH_NAD-bd	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0004617	GO:GO:0005488	GO:GO:0006564	GO:GO:0008150	GO:GO:0008152
GO:GO:0008652	GO:GO:0009058	GO:GO:0009987	GO:GO:0016491	GO:GO:0016616	GO:GO:0051287
GO:GO:0055114	InterPro:IPR002912	InterPro:IPR029009	InterPro:NAD(P)-bd_dom_sf	ProteinID:ONM12896.1	PFAM:PF00389
PFAM:PF01842	PFAM:PF02826	InterPro:PGDH	ScanProsite:PS00065	ScanProsite:PS00671	PANTHER:PTHR42938
PANTHER:PTHR42938:SF14	SMART:SM00997	SUPFAM:SSF143548	SUPFAM:SSF51735	SUPFAM:SSF52283	SUPFAM:SSF55021
TIGRFAMs:TIGR01327	UniParc:UPI000221CD71	EnsemblPlantsGene:Zm00001d002051	EnsemblPlants:Zm00001d002051_P001	EnsemblPlants:Zm00001d002051_T001	SEG:seg

Description

D-3-phosphoglycerate dehydrogenase 3 chloroplastic

Coordinates

chr2:-:5013826..5016702

Molecular Weight (calculated)

64799.6 Da

IEP (calculated)

7.226

GRAVY (calculated)

0.214

Length

626 amino acids

Sequence
(BLAST)

001: MAAPSPTTTA AAAAAATTHH RVLLPSARPR AAPSSLRLPL RAQPHAHAHA QRARLAAPVA AAAPAPAAST ASPESPASGA VAGKPTVLVA EKLGAAGLAL
101: LREFANVDCS YGLSPEDLRA KISLCDALIV RSGTKVGRDV FEASGGRLRV VGRAGVGIDN VDLAAATEHG CLVVNAPTAN TVAAAEHGIA LLTAMARNIA
201: QADASLKAGK WQRNKYVGVS LVGKTLAILG FGKVGSEVAR RAKGLGMHVI AHDPYASADR ARAIGVELVS MEEAMTTADF ISLHMPLTPA TDKMLNDEAF
301: AKMKKGVRII NVARGGVIDE EALVRALDSG VVAQAALDVF TKEPPAADNK LVLHGNVTVT PHLGASTVEA QEGVAIEIAE AVIGALKGEL AASAVNAPMV
401: PAEVLSELAP FVVLAEKLGR LAVQLVAGGG GIKSVKVTYA SARAPDDLDT RLLRAMITKG LIEPISSVFV NLVNADFTAK QRGVRITEER ILLDGSPETP
501: IDYIQVQIAN VESKFPSAIS ETGEITVEGR VKDGVPHLTK VGAFQVDVSL EGSLILCRQV DQPGMIGSVG SVLGEENVNV SFMSVGRIAP RKHAVMAIGV
601: DEEPSKGTLT KIGEIPAIEE FVFLKL

Best Arabidopsis Sequence Match ( AT4G34200.1 )
(BLAST)

001: MSATAAASSS IAVATNSLRN VTLSSRSPLP SAISVAFPSR GRNTLQRRLV LVSCSTGDGS KPTILVAEKL GDAGIKLLED VANVDCSYNM TPEELNIKIS
101: LCDALIVRSG TKVGREVFES SHGRLKVVGR AGVGIDNVDL SAATEFGCLV VNAPTANTIA AAEHGIALMA AMARNVAQAD ASVKAGEWKR NKYVGVSLVG
201: KTLAVLGFGK VGTEVARRAK GLGMRVIAHD PYAPADRAHA IGVDLVSFDE ALATADFISL HMPLTPTTSK ILNDETFAKM KKGVRIVNVA RGGVIDEDAL
301: VRALDAGIVA QAALDVFTKE PPAKDSKLVQ HERVTVTPHL GASTMEAQEG VAIEIAEAVV GALNGELAAT AVNAPMVSAE VLTELKPYVV LAEKLGRLAV
401: QLVAGGSGVK NAKITYASAR ATDDLDTRLL RAMITKGIIE PISDVYVNLV NADFTAKQRG LRLSEERVLL DGSPESPLET ITVQLSNVES KFASSLSESG
501: EVKVEGKVKD GVPHLTKVGS FEVDVTLEGS IILCRQVDQP GMIGTVGSIL GESNVNVNFM SVGRIAPRKQ AIMAIGVDDI PSKETLKKIG EIPAVEEFVF
601: LKL

Arabidopsis Description

PGDH1D-3-phosphoglycerate dehydrogenase [Source:UniProtKB/TrEMBL;Acc:A0A178UWV4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.