Factsheet for Zm00001d046923_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 2
mitochondrion 6

Predictors

GFP

MS/MS

Papers

plastid: 22065420
plastid: 23198870

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER90146	Sorghum	mitochondrion, plastid	91.34	87.77
HORVU7Hr1G111190.2	Barley	mitochondrion	76.06	84.85
TraesCS7A01G496500.1	Wheat	plastid	83.36	80.23
TraesCS7B01G400800.1	Wheat	plastid	83.19	80.2
TraesCS7D01G483800.1	Wheat	plastid	83.02	80.16
Os06t0655100-00	Rice	plastid	81.15	75.51
Zm00001d026472_P001	Maize	plastid	70.97	68.3
Zm00001d002051_P001	Maize	plastid	71.99	67.73
Zm00001d032114_P001	Maize	plastid	70.8	63.28
KRH23702	Soybean	extracellular	61.46	61.77
Zm00001d018790_P001	Maize	extracellular, plasma membrane	16.47	30.99
Zm00001d008883_P001	Maize	mitochondrion	16.98	30.3
Zm00001d024906_P001	Maize	cytosol	15.62	27.96
Zm00001d030544_P001	Maize	cytosol, extracellular	14.43	26.56
Zm00001d004451_P001	Maize	cytosol	14.77	25.82
Zm00001d024907_P001	Maize	mitochondrion	13.92	24.33
Zm00001d006877_P001	Maize	cytosol, mitochondrion, plastid	11.54	24.11
Zm00001d011368_P001	Maize	cytosol	11.71	23.88
Zm00001d011367_P001	Maize	cytosol	11.71	23.88
Zm00001d053924_P001	Maize	cytosol	9.34	23.31
Zm00001d005489_P006	Maize	mitochondrion	15.28	23.02
Zm00001d014163_P001	Maize	mitochondrion	9.34	22.73
Zm00001d014919_P002	Maize	mitochondrion	16.13	21.99
Zm00001d004323_P001	Maize	mitochondrion	5.09	20.69
Zm00001d045965_P001	Maize	mitochondrion	13.07	20.48
Zm00001d019818_P001	Maize	mitochondrion	4.92	20.0
Zm00001d033618_P001	Maize	cytosol	10.87	16.62
Zm00001d017801_P001	Maize	mitochondrion	4.41	15.12

Protein Annotations

KEGG:00260+1.1.1.95	KEGG:00680+1.1.1.95	Gene3D:3.30.1330.90	Gene3D:3.30.70.260	Gene3D:3.40.50.720	MapMan:4.1.4.1.1
InterPro:ACT_dom	ProteinID:AQL05190.1	InterPro:ASB_dom_sf	UniProt:B4G011	EMBL:BT042699	InterPro:D-isomer_2_OHA_DH_cat_dom
InterPro:D-isomer_DH_CS	InterPro:D-isomer_DH_CS1	InterPro:D-isomer_DH_NAD-bd	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0004617	GO:GO:0005488	GO:GO:0006564	GO:GO:0008150	GO:GO:0008152	GO:GO:0008652
GO:GO:0009058	GO:GO:0009987	GO:GO:0016491	GO:GO:0016616	GO:GO:0051287	GO:GO:0055114
InterPro:IPR002912	InterPro:IPR029009	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00389	PFAM:PF01842	PFAM:PF02826
InterPro:PGDH	ScanProsite:PS00065	ScanProsite:PS00670	ScanProsite:PS00671	PFscan:PS51671	PANTHER:PTHR42938
PANTHER:PTHR42938:SF4	SUPFAM:SSF143548	SUPFAM:SSF51735	SUPFAM:SSF52283	SUPFAM:SSF55021	TIGRFAMs:TIGR01327
UniParc:UPI00017B7857	EnsemblPlantsGene:Zm00001d046923	EnsemblPlants:Zm00001d046923_P001	EnsemblPlants:Zm00001d046923_T001	SEG:seg	:

Description

D-3-phosphoglycerate dehydrogenase 2 chloroplastic

Coordinates

chr9:+:110943034..110946165

Molecular Weight (calculated)

61726.9 Da

IEP (calculated)

6.597

GRAVY (calculated)

0.232

Length

589 amino acids

Sequence
(BLAST)

001: MALATPLRLR RHLLLPAGPS PATHRALSLR RGRLLPASLS AAAGGRPTVL VTETLGSAGL DLLRAFANVD CSYELTAEEL RAKVSLVDAL VVRSGTQVTR
101: EVFEAARGRL RVVGRAGVGI DNVDLQAATE AGCLVVNAPT ANTVAAAEHA VALLAAVARN IAPADASLKA GKWQRGKYVG VTLVGKTLAV MGFGKVGPEV
201: ARRARGLGMD VVAHDPYAAA DRARAVGVDL VSFDEAISTA DFISLHMPLT PSTAKLFNDE TFARMRKGVR IINVSRGGVV DEEALLRALD NGTVSQAALD
301: VFTEEPPPRD SKLVQHENVT VTPHLGASTI EAQEGVALEI AEAVIGALRG DLAATAVNAP MVPAEVLSEL SPYVVLAEKL GRLVVQLVAV GSGIKGVRVV
401: YSSARDPDDL DTRLLRAMVT KGIVEPISSA FVNIVNADYV AKQRGLRIVE ERVFLDGPPE VPLDSIQVHL ANVESKFAGA LSDAGHICVE GKVRDGGASH
501: LTLVGSLSVD VSLEGNLILC GQLDHPGIIG RVGSILGKMN VNVSFMSVSR TAPGKQAIMA IGVDEEPGKE ALKLIGDTPS VEEFVFLKL

Best Arabidopsis Sequence Match ( AT4G34200.1 )
(BLAST)

001: MSATAAASSS IAVATNSLRN VTLSSRSPLP SAISVAFPSR GRNTLQRRLV LVSCSTGDGS KPTILVAEKL GDAGIKLLED VANVDCSYNM TPEELNIKIS
101: LCDALIVRSG TKVGREVFES SHGRLKVVGR AGVGIDNVDL SAATEFGCLV VNAPTANTIA AAEHGIALMA AMARNVAQAD ASVKAGEWKR NKYVGVSLVG
201: KTLAVLGFGK VGTEVARRAK GLGMRVIAHD PYAPADRAHA IGVDLVSFDE ALATADFISL HMPLTPTTSK ILNDETFAKM KKGVRIVNVA RGGVIDEDAL
301: VRALDAGIVA QAALDVFTKE PPAKDSKLVQ HERVTVTPHL GASTMEAQEG VAIEIAEAVV GALNGELAAT AVNAPMVSAE VLTELKPYVV LAEKLGRLAV
401: QLVAGGSGVK NAKITYASAR ATDDLDTRLL RAMITKGIIE PISDVYVNLV NADFTAKQRG LRLSEERVLL DGSPESPLET ITVQLSNVES KFASSLSESG
501: EVKVEGKVKD GVPHLTKVGS FEVDVTLEGS IILCRQVDQP GMIGTVGSIL GESNVNVNFM SVGRIAPRKQ AIMAIGVDDI PSKETLKKIG EIPAVEEFVF
601: LKL

Arabidopsis Description

PGDH1D-3-phosphoglycerate dehydrogenase [Source:UniProtKB/TrEMBL;Acc:A0A178UWV4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.