CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 5
mitochondrion 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion, plastid
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	secretory
ChloroP:	plastid
EpiLoc:	plastid
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Plant-mPloc:	plastid
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d046923_P001	Maize	plastid	87.77	91.34
HORVU7Hr1G111190.2	Barley	mitochondrion	75.37	87.5
TraesCS7B01G400800.1	Wheat	plastid	83.2	83.47
TraesCS7D01G483800.1	Wheat	plastid	83.03	83.44
TraesCS7A01G496500.1	Wheat	plastid	83.2	83.33
Os06t0655100-00	Rice	plastid	80.91	78.36
EES12983	Sorghum	plastid	70.64	69.84
EES15079	Sorghum	plastid	69.33	68.66
KRH23702	Soybean	extracellular	59.71	62.46
OQU81061	Sorghum	plastid	15.66	30.09
KXG31500	Sorghum	cytosol	15.17	29.52
OQU88433	Sorghum	cytosol	14.85	28.35
EES11740	Sorghum	mitochondrion	15.17	28.18
EES10352	Sorghum	cytosol, mitochondrion	15.01	27.22
EES11738	Sorghum	cytosol	14.68	26.63
EES10400	Sorghum	cytosol	14.19	25.74
OQU81058	Sorghum	cytosol	13.54	24.78
KXG29243	Sorghum	cytosol	15.33	24.67
EER96197	Sorghum	mitochondrion	15.01	23.9
KXG34859	Sorghum	mitochondrion, plastid	14.68	23.44
EES07384	Sorghum	mitochondrion	13.87	22.14
EER89775	Sorghum	mitochondrion	13.54	22.07

Protein Annotations

KEGG:00260+1.1.1.95	KEGG:00270+3.3.1.1	KEGG:00680+1.1.1.95	Gene3D:3.30.1330.90	Gene3D:3.30.70.260	Gene3D:3.40.50.720
MapMan:4.1.4.1.1	EntrezGene:8069362	InterPro:ACT_dom	InterPro:ASB_dom_sf	InterPro:Ado_hCys_hydrolase_NAD-bd	UniProt:C5Z776
InterPro:D-isomer_2_OHA_DH_cat_dom	InterPro:D-isomer_DH_CS	InterPro:D-isomer_DH_CS1	InterPro:D-isomer_DH_NAD-bd	EnsemblPlants:EER90146	ProteinID:EER90146
ProteinID:EER90146.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004617	GO:GO:0005488
GO:GO:0006564	GO:GO:0008150	GO:GO:0008152	GO:GO:0008652	GO:GO:0009058	GO:GO:0009987
GO:GO:0016491	GO:GO:0016616	GO:GO:0051287	GO:GO:0055114	InterPro:IPR002912	InterPro:IPR029009
InterPro:NAD(P)-bd_dom_sf	PFAM:PF00389	PFAM:PF01842	PFAM:PF02826	InterPro:PGDH	ScanProsite:PS00065
ScanProsite:PS00670	ScanProsite:PS00671	PFscan:PS51671	PANTHER:PTHR42938	PANTHER:PTHR42938:SF4	MetaCyc:PWY-5041
SMART:SM00997	EnsemblPlantsGene:SORBI_3010G214100	SUPFAM:SSF143548	SUPFAM:SSF51735	SUPFAM:SSF52283	SUPFAM:SSF55021
TIGRFAMs:TIGR01327	UniParc:UPI0001A89B34	RefSeq:XP_002438779.1	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr10:-:55704057..55708160

Molecular Weight (calculated)

64003.6 Da

IEP (calculated)

6.615

GRAVY (calculated)

0.241

Length

613 amino acids

Sequence
(BLAST)

001: MALATPLRLR HLLPAAAAAP ARAPDPAGPS SLASHRALSL CRGRLLRAGL STTPRSGLVA VAAAASAAGG RPTVLVTENL GTAGLDLLRA FANVDCSYEL
101: TAEELRAKVS LVDALVVRSG TQVTREVFEA ARGRLRVVGR AGVGVDNVDL QAATEAGCLV VNAPTANTVA AAEHAVALLA AMARNVAQAD ASLKAGKWQR
201: SKYVGVTLVG KTLAVMGFGK VGPEVARRAK GLGMDVIVHD PYAAVDRARA IGVDMVSFDE AISTADFISL HMPLTPSTAK LFNDETFAKM RKGVRIINVA
301: RGGVVDEEAL LRALDNGTVA QAALDVFTEE PPPRDSKLVQ HENVTVTPHL GASTTEAQEG VALEIAEAVI GALRGDLAAT AVNAPTVPAE VLSELSSYVV
401: LAEKLGRLVV QLVAGGSGIK GIKVVFSSAR DPDDLDTRIL RAMVTKGIIE PISSAFVNIV NADYVAKQRG LRIVEERIFL DGSPEIPLDS IQVHLTNVES
501: KFAGALSDAG DIRVEGKVRD GAPHLTLVGS FRVDVSLVGN LILCCQVDQP GIIGKVGSIL GKMNVNVSFM SVGRTAPGKQ AIMAIGVDEE PEKEALKLIG
601: DTPSVEEFVF LKL

Best Arabidopsis Sequence Match ( AT1G17745.1 )
(BLAST)

001: MAFSSSCSSV KAVNSRWTSP SPSPSSRFAV LPAFLHRRYA TSVKLTAISA ALKTVEQTTL TEDNRFSTVG SDSDEYNPTL PKPRILVTEK LGEAGVNLLR
101: EFGDVDCSYD LSPEDLKKKV AESDALIVRS GTKVTREVFE AAKGRLKVVG RAGVGIDNVD LQAATEHGCL VVNAPTANTV AAAEHGIALL ASMARNVAQA
201: DASIKAGKWE RSKYVGVSLV GKTLAVMGFG KVGTEVARRA KGLGMTVISH DPYAPADRAR ALGVDLVSFD QAISTADFVS LHMPLTPATK KVFNDETFSK
301: MKKGVRLINV ARGGVIDEDA LVRALDAGIV AQAALDVFCE EPPSKDSRLI QHENVTVTPH LGASTKEAQE GVAIEIAEAV AGALKGELSA TAVNAPMVAP
401: EVLSELTPYI VLAEKLGRLA VQLASGGKGV QSIRVVYRSA RDRDDLDTRL LRAMITKGII EPISDSYVNL VNADFIAKQK GLRISEERMV VDSSPEYPVD
501: SIQVQILNVE SNFAGAVSDA GDISIEGKVK YGVPHLTCVG SFGVDVSLEG NLILCRQVDQ PGMIGQVGNI LGEQNVNVNF MSVGRTVLRK QAIMAIGVDE
601: EPDNKTLERI GGVSAIEEFV FLKL

Arabidopsis Description

PGDHD-3-phosphoglycerate dehydrogenase [Source:TAIR;Acc:AT1G17745]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.