CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 10

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G255200.2	Wheat	mitochondrion	86.46	88.06
TraesCS6B01G302400.2	Wheat	mitochondrion	85.68	87.27
EER89775	Sorghum	mitochondrion	81.25	82.98
Os06t0486900-01	Rice	mitochondrion	79.95	81.22
VIT_14s0066g01320.t01	Wine grape	mitochondrion	79.17	79.37
GSMUA_Achr3P01200_001	Banana	mitochondrion	78.39	78.59
Solyc02g086880.2.1	Tomato	plastid	77.6	78.22
KRG93315	Soybean	mitochondrion	76.3	78.13
PGSC0003DMT400001303	Potato	mitochondrion	77.34	77.95
KRG93317	Soybean	nucleus	76.56	75.58
KRH20294	Soybean	cytosol, endoplasmic reticulum, mitochondrion, nucleus	76.3	75.52
CDY09885	Canola	mitochondrion	75.26	75.46
Bra008737.1-P	Field mustard	mitochondrion	75.0	75.0
CDX69558	Canola	mitochondrion	75.0	75.0
AT5G14780.1	Thale cress	mitochondrion	74.74	74.74
CDX85582	Canola	mitochondrion	74.48	74.67
Bra023487.1-P	Field mustard	mitochondrion	74.22	74.22
CDX91020	Canola	mitochondrion	73.7	73.7
TraesCS5D01G389600.1	Wheat	extracellular, mitochondrion	68.49	71.66
TraesCS6A01G274900.1	Wheat	mitochondrion	69.53	70.82
OQU81061	Sorghum	plastid	23.44	28.21
OQU88433	Sorghum	cytosol	21.61	25.86
EES11740	Sorghum	mitochondrion	20.83	24.24
KXG31500	Sorghum	cytosol	19.01	23.17
EER96197	Sorghum	mitochondrion	23.18	23.12
OQU81058	Sorghum	cytosol	20.05	22.99
EES11738	Sorghum	cytosol	20.05	22.78
EES10352	Sorghum	cytosol, mitochondrion	20.05	22.78
EES10400	Sorghum	cytosol	19.79	22.49
KXG34859	Sorghum	mitochondrion, plastid	20.57	20.57
KXG29243	Sorghum	cytosol	20.31	20.47
EER90146	Sorghum	mitochondrion, plastid	22.14	13.87
EES12983	Sorghum	plastid	21.61	13.39
EES15079	Sorghum	plastid	21.35	13.25

Protein Annotations

KEGG:00630+1.17.1.9	KEGG:00680+1.17.1.9	Gene3D:3.40.50.720	MapMan:50.1.16	EntrezGene:8073848	UniProt:C5Y093
InterPro:D-isomer_2_OHA_DH_cat_dom	InterPro:D-isomer_DH_CS	InterPro:D-isomer_DH_CS1	InterPro:D-isomer_DH_NAD-bd	EnsemblPlants:EES07384	ProteinID:EES07384
ProteinID:EES07384.1	InterPro:FDH_NAD-dep	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0008150
GO:GO:0008152	GO:GO:0008863	GO:GO:0009056	GO:GO:0009987	GO:GO:0016491	GO:GO:0016616
GO:GO:0042183	GO:GO:0051287	GO:GO:0055114	HAMAP:MF_03210	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00389
PFAM:PF02826	ScanProsite:PS00065	ScanProsite:PS00670	ScanProsite:PS00671	PANTHER:PTHR42938	PANTHER:PTHR42938:SF1
MetaCyc:PWY-1881	MetaCyc:PWY-5497	MetaCyc:PWY-6696	EnsemblPlantsGene:SORBI_3004G265000	SUPFAM:SSF51735	SUPFAM:SSF52283
unigene:Sbi.14222	UniParc:UPI0001A85AFC	RefSeq:XP_002454408.1	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr4:-:60977206..60979663

Molecular Weight (calculated)

41798.2 Da

IEP (calculated)

7.741

GRAVY (calculated)

-0.225

Length

384 amino acids

Sequence
(BLAST)

001: MAMRRAAQQA ARFAMGPHVP HTAPAARSLH ASAGSKKIVG VFYKGGEYAD RNPNFVGCAE HALGIRGWLE SQGHQYIVTD DKDGPNCELE KHIADAHVLI
101: TTPFHPAYVT ADRIARAKNL ELLLTAGIGS DHVDLPAAAA AGLTVAEVTG SNTVSVAEDQ LMRVLVLMRN FLPGHHQAIS GEWDVAGVAH RAYDLEGKTV
201: GTVGAGRIGR LLLQRLRPFN CKLLYHDRLR IDPALEAETG AQFEADLDAM LPKCDVVVLN MPLTEKTRGM FDKERIARMK KGVIIVNNAR GAIMDTQAVA
301: DACATGHIAG YGGDVWHPQP APKDHPWRYM PNNAMTPHIS GTTIDGQLRY AAGVKDMLER YFKGQDFPVQ NYIVKEGNLA GQYQ

Best Arabidopsis Sequence Match ( AT5G14780.1 )
(BLAST)

001: MAMRQAAKAT IRACSSSSSS GYFARRQFNA SSGDSKKIVG VFYKANEYAT KNPNFLGCVE NALGIRDWLE SQGHQYIVTD DKEGPDCELE KHIPDLHVLI
101: STPFHPAYVT AERIKKAKNL KLLLTAGIGS DHIDLQAAAA AGLTVAEVTG SNVVSVAEDE LMRILILMRN FVPGYNQVVK GEWNVAGIAY RAYDLEGKTI
201: GTVGAGRIGK LLLQRLKPFG CNLLYHDRLQ MAPELEKETG AKFVEDLNEM LPKCDVIVIN MPLTEKTRGM FNKELIGKLK KGVLIVNNAR GAIMERQAVV
301: DAVESGHIGG YSGDVWDPQP APKDHPWRYM PNQAMTPHTS GTTIDAQLRY AAGTKDMLER YFKGEDFPTE NYIVKDGELA PQYR

Arabidopsis Description

FDH1Formate dehydrogenase, mitochondrial [Source:UniProtKB/TrEMBL;Acc:A0A178UHK7]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.