CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 10

Predictors

GFP

MS/MS

Papers

endoplasmic reticulum: 27224218
nucleus: 27291164
mitochondrion: 27780359
mitochondrion: 28499913

msms PMID: 27780359 doi

G Mustafa, S Komatsu

Graduate School of Life and Environmental Science, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27291164 doi

X Yin, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

msms PMID: 27224218 doi

X Wang, S Komatsu

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH10294
KRH23029
KRH24840
KRH29844

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G14780.1	KRH10294	AT3G46090.1	17259181
AT5G14780.1	KRH23029	AT3G46090.1	17259181
AT5G14780.1	KRH24840	AT3G46090.1	17259181
AT5G14780.1	KRH29844	AT3G46090.1	17259181

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG93317	Soybean	nucleus	89.33	86.12
KRH20294	Soybean	cytosol, endoplasmic reticulum, mitochondrion, nucleus	88.53	85.57
Zm00001d011367_P001	Maize	cytosol	65.87	85.47
Zm00001d011368_P001	Maize	cytosol	65.87	85.47
Zm00001d006877_P001	Maize	cytosol, mitochondrion, plastid	63.73	84.75
Os06t0486800-01	Rice	mitochondrion	82.4	82.18
Zm00001d045965_P001	Maize	mitochondrion	82.4	82.18
EER89775	Sorghum	mitochondrion	82.13	81.91
VIT_14s0066g01320.t01	Wine grape	mitochondrion	83.47	81.72
TraesCS7D01G232300.1	Wheat	mitochondrion	81.87	81.43
TraesCS7A01G232200.1	Wheat	golgi	81.87	81.43
TraesCS7B01G130600.1	Wheat	mitochondrion	81.87	81.43
HORVU7Hr1G047700.3	Barley	mitochondrion, plasma membrane	81.33	80.9
Os06t0486900-01	Rice	mitochondrion	80.27	79.63
Solyc02g086880.2.1	Tomato	plastid	80.8	79.53
PGSC0003DMT400001303	Potato	mitochondrion	80.8	79.53
TraesCS6B01G302400.2	Wheat	mitochondrion	78.93	78.51
Zm00001d053924_P001	Maize	cytosol	49.33	78.39
GSMUA_Achr3P01200_001	Banana	mitochondrion	80.0	78.33
TraesCS6D01G255200.2	Wheat	mitochondrion	78.67	78.25
TraesCS4D01G007200.1	Wheat	golgi	77.33	77.33
Zm00001d014163_P001	Maize	mitochondrion	49.87	77.27
TraesCS4B01G066400.1	Wheat	mitochondrion	73.07	77.18
AT5G14780.1	Thale cress	mitochondrion	78.4	76.56
EES07384	Sorghum	mitochondrion	78.13	76.3
CDY09885	Canola	mitochondrion	77.87	76.24
Bra008737.1-P	Field mustard	mitochondrion	77.6	75.78
CDX85582	Canola	mitochondrion	77.33	75.72
CDX69558	Canola	mitochondrion	77.33	75.52
Bra023487.1-P	Field mustard	mitochondrion	77.07	75.26
CDX91020	Canola	mitochondrion	76.27	74.48
Zm00001d004323_P001	Maize	mitochondrion	25.6	66.21
TraesCS5D01G389600.1	Wheat	extracellular, mitochondrion	63.73	65.12
Zm00001d019818_P001	Maize	mitochondrion	24.8	64.14
Zm00001d017801_P001	Maize	mitochondrion	29.33	63.95
TraesCS6A01G274900.1	Wheat	mitochondrion	62.67	62.33
Zm00001d033618_P001	Maize	cytosol	61.6	60.0
KRH44352	Soybean	peroxisome	11.47	28.1
KRH47286	Soybean	nucleus	19.73	23.64
KRH48310	Soybean	cytosol	19.73	22.16
KRH09880	Soybean	cytosol	17.87	22.11
KRH48311	Soybean	cytosol	19.47	21.86
KRH62463	Soybean	mitochondrion	22.13	21.23
KRH48312	Soybean	cytosol	18.93	21.07
KRH48313	Soybean	cytosol	18.67	20.83
KRH36064	Soybean	nucleus	20.8	20.21
KRG90684	Soybean	nucleus	20.8	20.21
KRH65201	Soybean	plastid	14.67	19.16
KRH65202	Soybean	cytosol	10.67	17.78
KRH35731	Soybean	nucleus	22.93	14.48
KRH44645	Soybean	nucleus	23.47	14.17
KRH23702	Soybean	extracellular	22.13	14.16
KRG91030	Soybean	endoplasmic reticulum	22.4	14.12
KRH47008	Soybean	endoplasmic reticulum	23.2	13.96

Protein Annotations

KEGG:00630+1.17.1.9	KEGG:00680+1.17.1.9	EntrezGene:100796009	Gene3D:3.40.50.720	MapMan:50.1.16	EMBL:ACUP02011548
InterPro:D-isomer_2_OHA_DH_cat_dom	InterPro:D-isomer_DH_CS	InterPro:D-isomer_DH_CS1	InterPro:D-isomer_DH_NAD-bd	InterPro:FDH_NAD-dep	EnsemblPlantsGene:GLYMA_19G009000
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0008150	GO:GO:0008152	GO:GO:0008863
GO:GO:0009056	GO:GO:0009987	GO:GO:0016491	GO:GO:0016616	GO:GO:0042183	GO:GO:0051287
GO:GO:0055114	UniProt:I1N5R9	EnsemblPlants:KRG93315	ProteinID:KRG93315	ProteinID:KRG93315.1	HAMAP:MF_03210
InterPro:NAD(P)-bd_dom_sf	PFAM:PF00389	PFAM:PF02826	ScanProsite:PS00065	ScanProsite:PS00670	ScanProsite:PS00671
PANTHER:PTHR42938	PANTHER:PTHR42938:SF1	MetaCyc:PWY-1881	MetaCyc:PWY-5497	MetaCyc:PWY-6696	SUPFAM:SSF51735
SUPFAM:SSF52283	UniParc:UPI0001BA8971	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr19:+:860974..865476

Molecular Weight (calculated)

41307.6 Da

IEP (calculated)

7.373

GRAVY (calculated)

-0.258

Length

375 amino acids

Sequence
(BLAST)

001: MAMKRAVQSL LASSSTLTRN LHASGEKKKI VGVFYKGNEY ASNPNFVGCV ERALGIREWL ESQGHQYIVT DDKEGPDSEL EKHIPDANVI ISTPFHPAYI
101: TAERIKKAKN LELLLTAGIG SDHVDLKAAA AAGLTVAEIT GSNVVSVAED ELLRILVLVR NFLPGYHQAV NGEWNVAGIA HRAYDLEGKT VGTVGAGRIG
201: KLLLQRLKPF NCNLLYYDRL RMNTDLEKEI GAKFEEDLDA MLPKCDVIVI NMPLTEQTRG LFDKNRIAKC KKGVVIVNNA RGAIMDTQAI ADACSSGHVA
301: GYGGDVWPIQ PAPKDHPWRY MPNHAMTPHI SGTTIDAQLR YAAGVKDMLD RHFKGEDFPE QNYIVKEGQL ASQYR

Best Arabidopsis Sequence Match ( AT5G14780.1 )
(BLAST)

001: MAMRQAAKAT IRACSSSSSS GYFARRQFNA SSGDSKKIVG VFYKANEYAT KNPNFLGCVE NALGIRDWLE SQGHQYIVTD DKEGPDCELE KHIPDLHVLI
101: STPFHPAYVT AERIKKAKNL KLLLTAGIGS DHIDLQAAAA AGLTVAEVTG SNVVSVAEDE LMRILILMRN FVPGYNQVVK GEWNVAGIAY RAYDLEGKTI
201: GTVGAGRIGK LLLQRLKPFG CNLLYHDRLQ MAPELEKETG AKFVEDLNEM LPKCDVIVIN MPLTEKTRGM FNKELIGKLK KGVLIVNNAR GAIMERQAVV
301: DAVESGHIGG YSGDVWDPQP APKDHPWRYM PNQAMTPHTS GTTIDAQLRY AAGTKDMLER YFKGEDFPTE NYIVKDGELA PQYR

Arabidopsis Description

FDH1Formate dehydrogenase, mitochondrial [Source:UniProtKB/TrEMBL;Acc:A0A178UHK7]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.