CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, endoplasmic reticulum, nucleus, cytosol

Predictor Summary:

cytosol 4
mitochondrion 3

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
endoplasmic reticulum: 27224218
mitochondrion: 27780359

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 27780359 doi

G Mustafa, S Komatsu

Graduate School of Life and Environmental Science, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH10294
KRH23029
KRH24840
KRH29844

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G14780.1	KRH10294	AT3G46090.1	17259181
AT5G14780.1	KRH23029	AT3G46090.1	17259181
AT5G14780.1	KRH24840	AT3G46090.1	17259181
AT5G14780.1	KRH29844	AT3G46090.1	17259181

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG93317	Soybean	nucleus	97.68	97.43
KRG93315	Soybean	mitochondrion	85.57	88.53
Zm00001d011368_P001	Maize	cytosol	65.21	87.54
Zm00001d011367_P001	Maize	cytosol	65.21	87.54
Zm00001d006877_P001	Maize	cytosol, mitochondrion, plastid	63.14	86.88
Os06t0486800-01	Rice	mitochondrion	80.67	83.24
Zm00001d045965_P001	Maize	mitochondrion	80.41	82.98
EER89775	Sorghum	mitochondrion	80.41	82.98
TraesCS7D01G232300.1	Wheat	mitochondrion	79.9	82.23
TraesCS7A01G232200.1	Wheat	golgi	79.9	82.23
TraesCS7B01G130600.1	Wheat	mitochondrion	79.9	82.23
HORVU7Hr1G047700.3	Barley	mitochondrion, plasma membrane	79.38	81.7
VIT_14s0066g01320.t01	Wine grape	mitochondrion	79.9	80.94
Zm00001d053924_P001	Maize	cytosol	48.71	80.08
TraesCS4D01G007200.1	Wheat	golgi	77.06	79.73
Zm00001d014163_P001	Maize	mitochondrion	49.48	79.34
GSMUA_Achr3P01200_001	Banana	mitochondrion	77.84	78.85
Os06t0486900-01	Rice	mitochondrion	76.8	78.84
Solyc02g086880.2.1	Tomato	plastid	77.32	78.74
PGSC0003DMT400001303	Potato	mitochondrion	77.32	78.74
TraesCS4B01G066400.1	Wheat	mitochondrion	71.13	77.75
AT5G14780.1	Thale cress	mitochondrion	76.55	77.34
TraesCS6D01G255200.2	Wheat	mitochondrion	75.0	77.19
TraesCS6B01G302400.2	Wheat	mitochondrion	75.0	77.19
Bra008737.1-P	Field mustard	mitochondrion	75.52	76.3
EES07384	Sorghum	mitochondrion	75.52	76.3
CDY09885	Canola	mitochondrion	75.26	76.24
CDX69558	Canola	mitochondrion	75.26	76.04
CDX85582	Canola	mitochondrion	73.97	74.93
Bra023487.1-P	Field mustard	mitochondrion	73.71	74.48
CDX91020	Canola	mitochondrion	72.94	73.7
Zm00001d004323_P001	Maize	mitochondrion	24.48	65.52
TraesCS5D01G389600.1	Wheat	extracellular, mitochondrion	61.6	65.12
Zm00001d019818_P001	Maize	mitochondrion	23.71	63.45
Zm00001d017801_P001	Maize	mitochondrion	27.84	62.79
TraesCS6A01G274900.1	Wheat	mitochondrion	59.54	61.27
Zm00001d033618_P001	Maize	cytosol	60.57	61.04
KRH44352	Soybean	peroxisome	10.57	26.8
KRH47286	Soybean	nucleus	18.3	22.68
KRH48310	Soybean	cytosol	19.33	22.46
KRH09880	Soybean	cytosol	16.75	21.45
KRH62463	Soybean	mitochondrion	21.13	20.97
KRH48311	Soybean	cytosol	18.04	20.96
KRH48312	Soybean	cytosol	17.53	20.18
KRH36064	Soybean	nucleus	19.59	19.69
KRG90684	Soybean	nucleus	19.59	19.69
KRH48313	Soybean	cytosol	17.01	19.64
KRH65201	Soybean	plastid	13.92	18.82
KRH65202	Soybean	cytosol	10.05	17.33
KRH35731	Soybean	nucleus	22.16	14.48
KRG91030	Soybean	endoplasmic reticulum	21.65	14.12
KRH44645	Soybean	nucleus	22.42	14.01
KRH47008	Soybean	endoplasmic reticulum	22.42	13.96
KRH23702	Soybean	extracellular	20.62	13.65

Protein Annotations

KEGG:00630+1.17.1.9	KEGG:00680+1.17.1.9	EntrezGene:100794313	Gene3D:3.40.50.720	MapMan:50.1.16	EMBL:ACUP02008253
EMBL:BT094321	UniProt:C6T9Z5	InterPro:D-isomer_2_OHA_DH_cat_dom	InterPro:D-isomer_DH_CS	InterPro:D-isomer_DH_CS1	InterPro:D-isomer_DH_NAD-bd
InterPro:FDH_NAD-dep	EnsemblPlantsGene:GLYMA_13G168700	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0008150
GO:GO:0008152	GO:GO:0008863	GO:GO:0009056	GO:GO:0009987	GO:GO:0016491	GO:GO:0016616
GO:GO:0042183	GO:GO:0051287	GO:GO:0055114	EnsemblPlants:KRH20294	ProteinID:KRH20294	ProteinID:KRH20294.1
HAMAP:MF_03210	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00389	PFAM:PF02826	ScanProsite:PS00065	ScanProsite:PS00670
PANTHER:PTHR42938	PANTHER:PTHR42938:SF1	MetaCyc:PWY-1881	MetaCyc:PWY-5497	MetaCyc:PWY-6696	SUPFAM:SSF51735
SUPFAM:SSF52283	UniParc:UPI0001B15E75	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr13:+:28306941..28309715

Molecular Weight (calculated)

42826.2 Da

IEP (calculated)

6.761

GRAVY (calculated)

-0.299

Length

388 amino acids

Sequence
(BLAST)

001: MSDPTLAQPH LVEVHTTLET VVTTHNHNHR PSINASGEKK KIVGVFYKGN EYAKLNPNFV GCVEGALGIR EWLESQGHQY IVTDDKEGPD SELEKHIPDA
101: HVIISTPFHP AYVTAERIKK AQKLELLLTA GIGSDHVDLK AAAAAGLTVA EVTGSNVVSV AEDELMRILI LMRNFLPGYH QAVKGEWNVA GIAHRAYDLE
201: GKTVGTVGAG RIGKLLLQRL KPFNCNLLYF DRLRIDPELE KEIGAKFEED LDAMLPKCDV IVINTPLTEQ TRGLFDKNRI AKCKKGVLIV NNARGAIADT
301: QAIADACSSG HVAGYSGDVW FPQPAPKDHP WRYMPNHAMT PHISGTTIDA QLRYAAGVKD MLDRHFKGED FPEQNYIVKE GQLASQYR

Best Arabidopsis Sequence Match ( AT5G14780.1 )
(BLAST)

001: MAMRQAAKAT IRACSSSSSS GYFARRQFNA SSGDSKKIVG VFYKANEYAT KNPNFLGCVE NALGIRDWLE SQGHQYIVTD DKEGPDCELE KHIPDLHVLI
101: STPFHPAYVT AERIKKAKNL KLLLTAGIGS DHIDLQAAAA AGLTVAEVTG SNVVSVAEDE LMRILILMRN FVPGYNQVVK GEWNVAGIAY RAYDLEGKTI
201: GTVGAGRIGK LLLQRLKPFG CNLLYHDRLQ MAPELEKETG AKFVEDLNEM LPKCDVIVIN MPLTEKTRGM FNKELIGKLK KGVLIVNNAR GAIMERQAVV
301: DAVESGHIGG YSGDVWDPQP APKDHPWRYM PNQAMTPHTS GTTIDAQLRY AAGTKDMLER YFKGEDFPTE NYIVKDGELA PQYR

Arabidopsis Description

FDH1Formate dehydrogenase, mitochondrial [Source:UniProtKB/TrEMBL;Acc:A0A178UHK7]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.