Factsheet for TraesCS4D01G007200.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

extracellular 3
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3
cytosol 2
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	cytosol, mitochondrion, plastid, secretory
iPSORT:	secretory
MultiLoc:	cytosol
Predotar:	plastid
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	mitochondrion

golgi: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d011368_P001	Maize	cytosol	69.87	90.66
Zm00001d011367_P001	Maize	cytosol	69.87	90.66
Zm00001d006877_P001	Maize	cytosol, mitochondrion, plastid	67.73	90.07
TraesCS7D01G232300.1	Wheat	mitochondrion	90.4	89.92
HORVU7Hr1G047700.3	Barley	mitochondrion, plasma membrane	89.6	89.12
TraesCS4B01G066400.1	Wheat	mitochondrion	84.0	88.73
Os06t0486800-01	Rice	mitochondrion	86.67	86.44
EER89775	Sorghum	mitochondrion	86.4	86.17
Zm00001d045965_P001	Maize	mitochondrion	85.87	85.64
Zm00001d053924_P001	Maize	cytosol	53.07	84.32
Zm00001d014163_P001	Maize	mitochondrion	51.73	80.17
VIT_14s0066g01320.t01	Wine grape	mitochondrion	81.6	79.9
GSMUA_Achr3P01200_001	Banana	mitochondrion	79.73	78.07
KRG93315	Soybean	mitochondrion	77.33	77.33
KRH20294	Soybean	cytosol, endoplasmic reticulum, mitochondrion, nucleus	79.73	77.06
KRG93317	Soybean	nucleus	79.73	76.86
TraesCS6D01G255200.2	Wheat	mitochondrion	77.07	76.66
Solyc02g086880.2.1	Tomato	plastid	77.6	76.38
PGSC0003DMT400001303	Potato	mitochondrion	77.6	76.38
AT5G14780.1	Thale cress	mitochondrion	77.6	75.78
CDY09885	Canola	mitochondrion	77.07	75.46
Bra008737.1-P	Field mustard	mitochondrion	77.07	75.26
CDX69558	Canola	mitochondrion	76.8	75.0
Bra023487.1-P	Field mustard	mitochondrion	75.73	73.96
CDX85582	Canola	mitochondrion	75.47	73.89
CDX91020	Canola	mitochondrion	74.4	72.66
Zm00001d004323_P001	Maize	mitochondrion	25.6	66.21
TraesCS5D01G389600.1	Wheat	extracellular, mitochondrion	64.27	65.67
Zm00001d019818_P001	Maize	mitochondrion	24.8	64.14
Zm00001d033618_P001	Maize	cytosol	65.33	63.64
Zm00001d017801_P001	Maize	mitochondrion	27.73	60.47
TraesCS2D01G030900.1	Wheat	cytosol	20.27	24.05
TraesCS2D01G034700.1	Wheat	mitochondrion, plastid	21.07	23.65
TraesCS2D01G034100.1	Wheat	mitochondrion	20.0	23.15
TraesCS2D01G034600.1	Wheat	mitochondrion	20.27	23.03
TraesCS2D01G034300.1	Wheat	plastid	21.87	22.65
TraesCS2D01G034000.1	Wheat	cytosol, peroxisome, plastid	19.2	22.57
TraesCS3D01G160800.1	Wheat	cytosol	18.67	22.01
TraesCS6D01G001700.1	Wheat	golgi, plastid	19.47	18.91
TraesCS5D01G166200.2	Wheat	mitochondrion, plastid	18.67	18.52
TraesCS7D01G483800.1	Wheat	plastid	22.93	14.1
TraesCS1D01G222600.2	Wheat	plastid	21.07	12.76
TraesCS3D01G160900.1	Wheat	cytosol	1.87	3.76

Protein Annotations

KEGG:00630+1.17.1.9	KEGG:00680+1.17.1.9	Gene3D:3.40.50.720	MapMan:50.1.16	InterPro:D-isomer_2_OHA_DH_cat_dom	InterPro:D-isomer_DH_CS
InterPro:D-isomer_DH_CS1	InterPro:D-isomer_DH_NAD-bd	InterPro:FDH_NAD-dep	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0008150	GO:GO:0008152	GO:GO:0008863	GO:GO:0016616	GO:GO:0051287
GO:GO:0055114	HAMAP:MF_03210	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00389	PFAM:PF02826	ScanProsite:PS00065
ScanProsite:PS00670	ScanProsite:PS00671	PANTHER:PTHR42938	PANTHER:PTHR42938:SF1	SUPFAM:SSF51735	SUPFAM:SSF52283
EnsemblPlantsGene:TraesCS4D01G007200	EnsemblPlants:TraesCS4D01G007200.1	TIGR:cd05302	SEG:seg	:	:

Description

No Description!

Coordinates

chr4D:-:3609158..3612959

Molecular Weight (calculated)

41390.8 Da

IEP (calculated)

6.441

GRAVY (calculated)

-0.191

Length

375 amino acids

Sequence
(BLAST)

001: MPSAPPFFSQ AFSLARFASI LMSAGGKKIV GVFYQAGEYA DKNPDFVGCV EGALGIRDWL ESNGHHYIVT DDKEGLNSEL EKHIEDMHVL ITTPFHPAYV
101: TAERIKKAKN LELVLTAGIG SDHIDLLAAA ATGLTVAEVT GSNTVSVAED QLMRILILLR NFLPGYQQVV KGEWNVAGIA HRAYDLEGKT VGTVGAGRIG
201: RLLLQRLKPF NCNMLYHDRI RINPELEKEI GANFEEDLDV MLPKCDVIVI NTPLTEKTRG MFNKEKIAKM KKGVIIVNNA RGAIMDTQAV ADACSNGYIA
301: GYGGDVWFPQ PAPKDHPWRY MPNHAMTPHT SGTTIDAQLR YASGVKDMLD RYFKGEDFPA ENYIVKEGEL ASQYK

Best Arabidopsis Sequence Match ( AT5G14780.2 )
(BLAST)

001: MIFQSFSLLN LLMKQASSGD SKKIVGVFYK ANEYATKNPN FLGCVENALG IRDWLESQGH QYIVTDDKEG PDCELEKHIP DLHVLISTPF HPAYVTAERI
101: KKAKNLKLLL TAGIGSDHID LQAAAAAGLT VAEVTGSNVV SVAEDELMRI LILMRNFVPG YNQVVKGEWN VAGIAYRAYD LEGKTIGTVG AGRIGKLLLQ
201: RLKPFGCNLL YHDRLQMAPE LEKETGAKFV EDLNEMLPKC DVIVINMPLT EKTRGMFNKE LIGKLKKGVL IVNNARGAIM ERQAVVDAVE SGHIGGYSGD
301: VWDPQPAPKD HPWRYMPNQA MTPHTSGTTI DAQLRYAAGT KDMLERYFKG EDFPTENYIV KDGELAPQYR

Arabidopsis Description

FDH1Formate dehydrogenase, mitochondrial [Source:UniProtKB/TrEMBL;Acc:A0A178UHK7]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.