Factsheet for TraesCS5D01G166200.2

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 3
mitochondrion 5

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5B01G158700.2	Wheat	mitochondrion, plastid	98.68	98.68
TraesCS5A01G161300.1	Wheat	plastid	98.68	98.68
TraesCS7B01G373500.1	Wheat	cytosol	25.13	91.35
HORVU5Hr1G050350.1	Barley	mitochondrion, plastid	96.03	91.21
Os07t0264100-01	Rice	mitochondrion	78.57	79.41
Os07t0263400-00	Rice	cytosol	57.67	76.76
KXG34859	Sorghum	mitochondrion, plastid	76.72	75.52
Zm00001d005489_P006	Maize	mitochondrion	76.72	74.17
GSMUA_Achr3P21910_001	Banana	cytosol	61.64	68.33
Solyc11g020060.1.1	Tomato	cytosol	45.77	61.57
VIT_18s0041g01830.t01	Wine grape	cytosol	55.56	61.22
PGSC0003DMT400071027	Potato	cytosol	49.47	60.71
PGSC0003DMT400085920	Potato	mitochondrion	27.51	56.52
AT1G72190.1	Thale cress	mitochondrion	54.23	54.96
KRH62463	Soybean	mitochondrion	56.08	54.22
Bra003888.1-P	Field mustard	mitochondrion	52.65	53.49
CDY50445	Canola	mitochondrion	52.65	53.35
CDX68275	Canola	mitochondrion	52.38	53.23
Solyc03g044670.1.1	Tomato	cytosol	29.63	46.67
TraesCS2D01G034100.1	Wheat	mitochondrion	20.63	24.07
TraesCS2D01G034700.1	Wheat	mitochondrion, plastid	20.9	23.65
TraesCS3D01G160800.1	Wheat	cytosol	19.84	23.58
TraesCS2D01G034600.1	Wheat	mitochondrion	20.37	23.33
TraesCS2D01G034300.1	Wheat	plastid	21.43	22.38
TraesCS2D01G030900.1	Wheat	cytosol	18.25	21.84
TraesCS2D01G034000.1	Wheat	cytosol, peroxisome, plastid	17.72	21.0
TraesCS6D01G255200.2	Wheat	mitochondrion	19.84	19.89
TraesCS7D01G232300.1	Wheat	mitochondrion	19.31	19.36
TraesCS4D01G007200.1	Wheat	golgi	18.52	18.67
TraesCS6D01G001700.1	Wheat	golgi, plastid	18.25	17.88
TraesCS5D01G389600.1	Wheat	extracellular, mitochondrion	16.67	17.17
TraesCS7D01G483800.1	Wheat	plastid	24.34	15.08
TraesCS1D01G222600.2	Wheat	plastid	22.75	13.89
TraesCS3D01G160900.1	Wheat	cytosol	0.53	1.08

Protein Annotations

Gene3D:3.40.50.720	MapMan:35.1	InterPro:D-isomer_2_OHA_DH_cat_dom	InterPro:D-isomer_DH_CS	InterPro:D-isomer_DH_NAD-bd	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0008150	GO:GO:0008152	GO:GO:0016616
GO:GO:0051287	GO:GO:0055114	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00389	PFAM:PF02826	ScanProsite:PS00671
PANTHER:PTHR42938	PANTHER:PTHR42938:SF2	SUPFAM:SSF51735	SUPFAM:SSF52283	SignalP:SignalP-noTM	EnsemblPlantsGene:TraesCS5D01G166200
EnsemblPlants:TraesCS5D01G166200.2	TIGR:cd12175	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr5D:+:258639506..258646975

Molecular Weight (calculated)

41249.0 Da

IEP (calculated)

7.553

GRAVY (calculated)

0.048

Length

378 amino acids

Sequence
(BLAST)

001: MAGARSAATR LTHSSLFLLS RAAAAAATRR TNLPSSPRDY SKMASSVGGN GYSDVTRVLF CGHYWPASTI YTKEYLQNYP FIQVDEVGLE HVPDVIQNYH
101: ICVVKNKCID SDIIAKATKM KIIMQYGVGL EGVDINAATE QKIKVARIPG STTGNAIACA EMAIYLTLGV LRKQKEMDTA VIQKDLGLPV GETIFGKTIL
201: ILGFGAIGME IAKRLRPFGV KILATKRNWS SNTVSCDLDG LVDKKSGPED MYELAREADI VITCMTLNNE SVGIVDHKFL SALKKGSYLI NIARGRLLDY
301: TAVFNHLESG HLGGLGIDVA WTEPFDPEDP ILKFPNVIIT PHVAGITEYS YRTMAKVVGD VALKLHAGEP FTEIEFVN

Best Arabidopsis Sequence Match ( AT1G72190.1 )
(BLAST)

001: MTIMFKIAKA TLRSRNSSVA SLFYSIQARS ISRQSKVVKI ERIVEKEDMH VTRVLFCGPH FPDSYNFTRE YLQPYPFIKV DVVHYRDVPE VIKNYHICVA
101: MTMQMDSNVI SRASNIKLIM QYGVGLDGVD IDAATKHGIK VARIPSEGTG NAASCSEMAI YLMLGLLKKQ NEMQISLRNR LLGEPTGDTL LGKTVFILGY
201: GNIGIELAKR LKPFGSRVIA TKRFWPASIV DSDSRLVDEK GSHEDIYTFA GKADIVVVCL RLNKETAEIV NKEFICSMKK GALLVNIARG GLINYESAFQ
301: NLESGHLGGL GIDVAWSEPF DPNDPILKFK NVIITPHVAG VTEYSYRSMA KIVGDLALQL HEGLPLTGIE FVN

Arabidopsis Description

D-isomer specific 2-hydroxyacid dehydrogenase family protein [Source:UniProtKB/TrEMBL;Acc:F4IBQ3]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.