Factsheet for Bra003888.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 4
mitochondrion 7

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX68275	Canola	mitochondrion	97.85	97.85
AT1G72190.1	Thale cress	mitochondrion	83.33	83.11
VIT_18s0041g01830.t01	Wine grape	cytosol	59.95	65.01
Solyc11g020060.1.1	Tomato	cytosol	48.92	64.77
PGSC0003DMT400071027	Potato	cytosol	51.34	62.01
PGSC0003DMT400085920	Potato	mitochondrion	29.84	60.33
GSMUA_Achr3P21910_001	Banana	cytosol	55.11	60.12
KRH62463	Soybean	mitochondrion	61.56	58.57
EER96197	Sorghum	mitochondrion	56.45	54.55
KXG34859	Sorghum	mitochondrion, plastid	55.65	53.91
Os07t0264100-01	Rice	mitochondrion	53.76	53.48
TraesCS5B01G158700.2	Wheat	mitochondrion, plastid	53.76	52.91
TraesCS5D01G166200.2	Wheat	mitochondrion, plastid	53.49	52.65
TraesCS5A01G161300.1	Wheat	plastid	53.49	52.65
Os07t0263400-00	Rice	cytosol	40.05	52.46
Zm00001d005489_P006	Maize	mitochondrion	54.57	51.92
Solyc03g044670.1.1	Tomato	cytosol	33.33	51.67
HORVU5Hr1G050350.1	Barley	mitochondrion, plastid	53.49	50.0
TraesCS7B01G373500.1	Wheat	cytosol	12.37	44.23
Bra035206.1-P	Field mustard	cytosol	21.24	25.48
Bra003537.1-P	Field mustard	cytosol	21.24	25.24
Bra026966.1-P	Field mustard	cytosol	14.52	22.59
Bra019774.1-P	Field mustard	cytosol	20.7	22.32
Bra008737.1-P	Field mustard	mitochondrion	22.85	22.14
Bra035498.1-P	Field mustard	cytosol	5.65	21.43
Bra023487.1-P	Field mustard	mitochondrion	22.04	21.35
Bra004275.1-P	Field mustard	cytosol	20.16	19.43
Bra004055.1-P	Field mustard	cytosol	19.89	19.17
Bra017637.1-P	Field mustard	plastid	25.27	15.72
Bra026967.1-P	Field mustard	cytosol, nucleus, plastid	16.4	15.37
Bra034616.1-P	Field mustard	plastid	24.73	15.31
Bra011506.1-P	Field mustard	plastid	24.73	14.81
Bra001747.1-P	Field mustard	plastid	22.85	14.48
Bra016589.1-P	Field mustard	plastid	23.39	14.01
Bra034615.1-P	Field mustard	cytosol	1.08	2.34

Protein Annotations

Gene3D:3.40.50.720	MapMan:35.1	EnsemblPlantsGene:Bra003888	EnsemblPlants:Bra003888.1	EnsemblPlants:Bra003888.1-P	InterPro:D-isomer_2_OHA_DH_cat_dom
InterPro:D-isomer_DH_NAD-bd	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0008150
GO:GO:0008152	GO:GO:0016491	GO:GO:0016616	GO:GO:0051287	GO:GO:0055114	UniProt:M4CI55
InterPro:NAD(P)-bd_dom_sf	PFAM:PF00389	PFAM:PF02826	PANTHER:PTHR42938	PANTHER:PTHR42938:SF2	SUPFAM:SSF51735
SUPFAM:SSF52283	UniParc:UPI000254180F	SEG:seg	:	:	:

Description

AT1G72190 (E=1e-163) | oxidoreductase family protein

Coordinates

chrA07:+:15575057..15576915

Molecular Weight (calculated)

40945.7 Da

IEP (calculated)

9.210

GRAVY (calculated)

-0.096

Length

372 amino acids

Sequence
(BLAST)

001: MYNIAKAAFR NKNSTVASLL CSHQSRSISR QSSKLVKPER MAEKEEDKKV TRVLFCGPHL PDSYNFTRDY LQPYPFIQAD VAHFRDVPEV IKNYHICVTL
101: LMQMDSYVIS RATNMKLIMQ FGVGLDGVDI DAATKNGIKV ARIPSEGNGN AASCSEMAIY LMLGLLKKQN EMQMSVQSRL LGQPTGGTLL GKTVFILGYG
201: NIGIELAKRL KPFGSRVIAT KRSWPASVMN SDSNLVDEKG SHEDIYTFAS KADIVAVCLR LSKETAEIVN NKFISSMKKG ALLVNIARGG LVSYESAYQS
301: LESGHLGGLG TDVAWSEPFD PNDPILKFKN VIMTPHVAGV TEFSYRSMAK VVGDVALQLH EGLPLTRIEL VN

Best Arabidopsis Sequence Match ( AT1G72190.1 )
(BLAST)

001: MTIMFKIAKA TLRSRNSSVA SLFYSIQARS ISRQSKVVKI ERIVEKEDMH VTRVLFCGPH FPDSYNFTRE YLQPYPFIKV DVVHYRDVPE VIKNYHICVA
101: MTMQMDSNVI SRASNIKLIM QYGVGLDGVD IDAATKHGIK VARIPSEGTG NAASCSEMAI YLMLGLLKKQ NEMQISLRNR LLGEPTGDTL LGKTVFILGY
201: GNIGIELAKR LKPFGSRVIA TKRFWPASIV DSDSRLVDEK GSHEDIYTFA GKADIVVVCL RLNKETAEIV NKEFICSMKK GALLVNIARG GLINYESAFQ
301: NLESGHLGGL GIDVAWSEPF DPNDPILKFK NVIITPHVAG VTEYSYRSMA KIVGDLALQL HEGLPLTGIE FVN

Arabidopsis Description

D-isomer specific 2-hydroxyacid dehydrogenase family protein [Source:UniProtKB/TrEMBL;Acc:F4IBQ3]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.