Factsheet for Bra034615.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plastid 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra034616.1-P	Field mustard	plastid	100.0	28.45
Bra017637.1-P	Field mustard	plastid	95.91	27.42
Bra011506.1-P	Field mustard	plastid	97.08	26.73
Bra001747.1-P	Field mustard	plastid	77.19	22.49
Bra016589.1-P	Field mustard	plastid	70.76	19.48
Bra035498.1-P	Field mustard	cytosol	2.34	4.08
Bra004055.1-P	Field mustard	cytosol	5.85	2.59
Bra004275.1-P	Field mustard	cytosol	5.85	2.59
Bra035206.1-P	Field mustard	cytosol	2.92	1.61
Bra003537.1-P	Field mustard	cytosol	2.92	1.6
Bra003888.1-P	Field mustard	mitochondrion	2.34	1.08
Bra008737.1-P	Field mustard	mitochondrion	2.34	1.04
Bra026967.1-P	Field mustard	cytosol, nucleus, plastid	2.34	1.01
Bra019774.1-P	Field mustard	cytosol	1.75	0.87
Bra023487.1-P	Field mustard	mitochondrion	1.75	0.78
Bra026966.1-P	Field mustard	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:Bra034615.1	EnsemblPlants:Bra034615.1-P	EnsemblPlantsGene:Bra034615	Gene3D:3.30.1330.90	Gene3D:3.30.70.260	InterPro:ACT_dom
InterPro:ASB_dom_sf	InterPro:IPR002912	InterPro:IPR029009	ncoils:Coil	PANTHER:PTHR42938	PANTHER:PTHR42938:SF14
PFAM:PF01842	PFscan:PS51671	SUPFAM:SSF143548	SUPFAM:SSF55021	UniParc:UPI000254657A	UniProt:M4F0M0
MapMan:4.1.4.1.1	:	:	:	:	:

Description

AT4G34200 (E=2e-088) EDA9 | EDA9 (embryo sac development arrest 9); ATP binding

Coordinates

chrA08:+:12517109..12517624

Molecular Weight (calculated)

18494.4 Da

IEP (calculated)

4.627

GRAVY (calculated)

0.023

Length

171 amino acids

Sequence
(BLAST)

001: MITKGIIEPI SDVYVNLVNA DFTAKQRGLR LSEERVLLDG SPENPLETIT VQLGNVESKF ASSLSESGEV KVEGRVKDGI PHLTKVGSFE VDVTLEGSII
101: LCRQVDQPGM IGTVGSILGE SNVNVNFMSV GRIAPRKQAI MAIGVDDQPS KETLKKIGEI PAIEEFVFLK L

Best Arabidopsis Sequence Match ( AT1G17745.1 )
(BLAST)

001: MAFSSSCSSV KAVNSRWTSP SPSPSSRFAV LPAFLHRRYA TSVKLTAISA ALKTVEQTTL TEDNRFSTVG SDSDEYNPTL PKPRILVTEK LGEAGVNLLR
101: EFGDVDCSYD LSPEDLKKKV AESDALIVRS GTKVTREVFE AAKGRLKVVG RAGVGIDNVD LQAATEHGCL VVNAPTANTV AAAEHGIALL ASMARNVAQA
201: DASIKAGKWE RSKYVGVSLV GKTLAVMGFG KVGTEVARRA KGLGMTVISH DPYAPADRAR ALGVDLVSFD QAISTADFVS LHMPLTPATK KVFNDETFSK
301: MKKGVRLINV ARGGVIDEDA LVRALDAGIV AQAALDVFCE EPPSKDSRLI QHENVTVTPH LGASTKEAQE GVAIEIAEAV AGALKGELSA TAVNAPMVAP
401: EVLSELTPYI VLAEKLGRLA VQLASGGKGV QSIRVVYRSA RDRDDLDTRL LRAMITKGII EPISDSYVNL VNADFIAKQK GLRISEERMV VDSSPEYPVD
501: SIQVQILNVE SNFAGAVSDA GDISIEGKVK YGVPHLTCVG SFGVDVSLEG NLILCRQVDQ PGMIGQVGNI LGEQNVNVNF MSVGRTVLRK QAIMAIGVDE
601: EPDNKTLERI GGVSAIEEFV FLKL

Arabidopsis Description

PGDHD-3-phosphoglycerate dehydrogenase [Source:TAIR;Acc:AT1G17745]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.