Factsheet for Bra016589.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX96754	Canola	plastid	99.84	99.84
CDX83893	Canola	plastid	98.39	98.23
AT1G17745.2	Thale cress	plastid	90.82	86.64
KRH44645	Soybean	nucleus	75.2	75.2
KRH47008	Soybean	endoplasmic reticulum	74.88	74.64
Solyc03g123830.2.1	Tomato	plastid	75.2	74.48
VIT_09s0018g01870.t01	Wine grape	plastid	74.24	73.88
PGSC0003DMT400023675	Potato	plastid	75.85	73.82
GSMUA_Achr10P...	Banana	plastid	71.01	71.59
GSMUA_Achr3P27990_001	Banana	plastid	70.69	71.38
Bra034616.1-P	Field mustard	plastid	69.08	71.38
Bra017637.1-P	Field mustard	plastid	68.6	71.24
Bra034615.1-P	Field mustard	cytosol	19.48	70.76
Bra001747.1-P	Field mustard	plastid	66.51	70.36
Bra011506.1-P	Field mustard	plastid	68.76	68.76
GSMUA_Achr9P22790_001	Banana	plastid	57.65	68.19
Bra035498.1-P	Field mustard	cytosol	4.67	29.59
Bra035206.1-P	Field mustard	cytosol	13.69	27.42
Bra004275.1-P	Field mustard	cytosol	16.1	25.91
Bra004055.1-P	Field mustard	cytosol	16.1	25.91
Bra003537.1-P	Field mustard	cytosol	12.88	25.56
Bra019774.1-P	Field mustard	cytosol	13.69	24.64
Bra026966.1-P	Field mustard	cytosol	9.02	23.43
Bra003888.1-P	Field mustard	mitochondrion	14.01	23.39
Bra023487.1-P	Field mustard	mitochondrion	14.17	22.92
Bra008737.1-P	Field mustard	mitochondrion	14.17	22.92
Bra026967.1-P	Field mustard	cytosol, nucleus, plastid	12.08	18.89

Protein Annotations

KEGG:00260+1.1.1.95	KEGG:00680+1.1.1.95	Gene3D:3.30.1330.90	Gene3D:3.30.70.260	Gene3D:3.40.50.720	MapMan:4.1.4.1.1
InterPro:ACT_dom	InterPro:ASB_dom_sf	EnsemblPlantsGene:Bra016589	EnsemblPlants:Bra016589.1	EnsemblPlants:Bra016589.1-P	InterPro:D-isomer_2_OHA_DH_cat_dom
InterPro:D-isomer_DH_CS	InterPro:D-isomer_DH_CS1	InterPro:D-isomer_DH_NAD-bd	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0004617	GO:GO:0005488	GO:GO:0006564	GO:GO:0008150	GO:GO:0008152	GO:GO:0008652
GO:GO:0009058	GO:GO:0009987	GO:GO:0016491	GO:GO:0016616	GO:GO:0051287	GO:GO:0055114
InterPro:IPR002912	InterPro:IPR029009	UniProt:M4DJB1	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00389	PFAM:PF01842
PFAM:PF02826	InterPro:PGDH	ScanProsite:PS00065	ScanProsite:PS00670	ScanProsite:PS00671	PFscan:PS51671
PANTHER:PTHR42938	PANTHER:PTHR42938:SF14	SUPFAM:SSF143548	SUPFAM:SSF51735	SUPFAM:SSF52283	SUPFAM:SSF55021
TIGRFAMs:TIGR01327	UniParc:UPI00025454D4	SEG:seg	:	:	:

Description

AT1G17745 (E=4e-289) PGDH | PGDH (3-PHOSPHOGLYCERATE DEHYDROGENASE); phosphoglycerate dehydrogenase

Coordinates

chrA08:-:19176302..19180388

Molecular Weight (calculated)

66127.5 Da

IEP (calculated)

5.790

GRAVY (calculated)

-0.010

Length

621 amino acids

Sequence
(BLAST)

001: MALSSSCSTL KAVNSRWTSP APKLAAIRRH SLLPELRYTP NVKLTATNAL RTVEQTTLTE DDHLSTYGSD QDDQESLPKP RILVAEKLGE AGVNLLKDFG
101: DVDCSYELSP EDLKKKVAES DALIVRSGTK VTREVFEAAK GRLKVVGRAG VGIDNADLQA ATEYGCLVVN APTANTVAAA EHGIALLASM ARNVAQADAS
201: IKAGKWERSK YVGVSLVGKT LAIMGFGKVG TEVARRAKGL GMNVISHDPY APADRARALG VELVSFDQAI STADFISLHM PLTPATKKVF NDETFSKMKK
301: GVRLINVARG GVIDEDALVR ALDSGVVAQA ALDVFCEEPP SKESRLIQHE NVTVTPHLGA STKEAQEGVA IEIAEAVAGA LRGELSATAV NAPMVAPEVL
401: SELAPYIVLA EKLGRLAVQL ASGGKGVQSI KVVYRSARDR DDLDTRLLRA MITKGIIEPI SDSYVNLVNA DFIAKQKGLR ISEERTVVES SPEYPVDSIQ
501: VQISNVESSF AGAVSDGGAI SIEGKVKYGV PHLTCVGSFG VDVSLEGNLI LCRQVDQPGM IGQVGNILGE QNVNVSFMSV GRTVVRKQAI MAIGVDEEPD
601: KKTLERIGGV SAIEEFVFLK L

Best Arabidopsis Sequence Match ( AT1G17745.1 )
(BLAST)

001: MAFSSSCSSV KAVNSRWTSP SPSPSSRFAV LPAFLHRRYA TSVKLTAISA ALKTVEQTTL TEDNRFSTVG SDSDEYNPTL PKPRILVTEK LGEAGVNLLR
101: EFGDVDCSYD LSPEDLKKKV AESDALIVRS GTKVTREVFE AAKGRLKVVG RAGVGIDNVD LQAATEHGCL VVNAPTANTV AAAEHGIALL ASMARNVAQA
201: DASIKAGKWE RSKYVGVSLV GKTLAVMGFG KVGTEVARRA KGLGMTVISH DPYAPADRAR ALGVDLVSFD QAISTADFVS LHMPLTPATK KVFNDETFSK
301: MKKGVRLINV ARGGVIDEDA LVRALDAGIV AQAALDVFCE EPPSKDSRLI QHENVTVTPH LGASTKEAQE GVAIEIAEAV AGALKGELSA TAVNAPMVAP
401: EVLSELTPYI VLAEKLGRLA VQLASGGKGV QSIRVVYRSA RDRDDLDTRL LRAMITKGII EPISDSYVNL VNADFIAKQK GLRISEERMV VDSSPEYPVD
501: SIQVQILNVE SNFAGAVSDA GDISIEGKVK YGVPHLTCVG SFGVDVSLEG NLILCRQVDQ PGMIGQVGNI LGEQNVNVNF MSVGRTVLRK QAIMAIGVDE
601: EPDNKTLERI GGVSAIEEFV FLKL

Arabidopsis Description

PGDHD-3-phosphoglycerate dehydrogenase [Source:TAIR;Acc:AT1G17745]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.