Factsheet for Solyc03g123830.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

plastid: 22908117
extracellular: 29876421

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400023675	Potato	plastid	98.56	96.87
VIT_09s0018g01870.t01	Wine grape	plastid	77.35	77.72
KRH44645	Soybean	nucleus	75.76	76.49
KRH47008	Soybean	endoplasmic reticulum	75.44	75.92
CDX83893	Canola	plastid	74.8	75.4
CDX96754	Canola	plastid	74.64	75.36
Bra016589.1-P	Field mustard	plastid	74.48	75.2
Solyc10g049890.1.1	Tomato	plastid	70.97	74.79
Solyc03g112070.2.1	Tomato	plastid	71.29	74.5
GSMUA_Achr10P...	Banana	plastid	73.05	74.35
GSMUA_Achr3P27990_001	Banana	plastid	71.77	73.17
GSMUA_Achr9P22790_001	Banana	plastid	59.65	71.24
AT1G17745.2	Thale cress	plastid	73.68	70.97
Solyc11g020060.1.1	Tomato	cytosol	12.92	28.83
Solyc01g111630.2.1	Tomato	nucleus, plastid	16.43	26.68
Solyc12g044260.1.1	Tomato	cytosol	13.08	26.2
Solyc03g120670.2.1	Tomato	cytosol, nucleus, plastid	12.92	25.88
Solyc08g080030.2.1	Tomato	cytosol	10.85	25.19
Solyc12g044250.1.1	Tomato	vacuole	12.44	24.76
Solyc03g120680.2.1	Tomato	nucleus	11.96	24.12
Solyc01g093990.2.1	Tomato	cytosol	12.28	23.84
Solyc03g044670.1.1	Tomato	cytosol	9.09	23.75
Solyc03g120660.2.1	Tomato	cytosol	5.42	21.52
Solyc02g086880.2.1	Tomato	plastid	12.12	19.95

Protein Annotations

KEGG:00260+1.1.1.95	KEGG:00680+1.1.1.95	Gene3D:3.30.1330.90	Gene3D:3.30.70.260	Gene3D:3.40.50.720	MapMan:4.1.4.1.1
InterPro:ACT_dom	InterPro:ASB_dom_sf	InterPro:D-isomer_2_OHA_DH_cat_dom	InterPro:D-isomer_DH_CS	InterPro:D-isomer_DH_CS1	InterPro:D-isomer_DH_NAD-bd
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004617	GO:GO:0005488	GO:GO:0006564
GO:GO:0008150	GO:GO:0008152	GO:GO:0008652	GO:GO:0009058	GO:GO:0009987	GO:GO:0016491
GO:GO:0016616	GO:GO:0051287	GO:GO:0055114	InterPro:IPR002912	InterPro:IPR029009	UniProt:K4BN81
InterPro:NAD(P)-bd_dom_sf	PFAM:PF00389	PFAM:PF01842	PFAM:PF02826	InterPro:PGDH	ScanProsite:PS00065
ScanProsite:PS00670	ScanProsite:PS00671	PFscan:PS51671	PANTHER:PTHR42938	PANTHER:PTHR42938:SF14	SUPFAM:SSF143548
SUPFAM:SSF51735	SUPFAM:SSF52283	SUPFAM:SSF55021	EnsemblPlantsGene:Solyc03g123830.2	EnsemblPlants:Solyc03g123830.2.1	TIGRFAMs:TIGR01327
UniParc:UPI0002765DF4	SEG:seg	:	:	:	:

Description

D-3-phosphoglycerate dehydrogenase 2, chloroplastic [Source:Projected from Arabidopsis thaliana (AT1G17745) UniProtKB/Swiss-Prot;Acc:O04130]

Coordinates

chr3:+:70540756..70543844

Molecular Weight (calculated)

66137.7 Da

IEP (calculated)

6.654

GRAVY (calculated)

0.110

Length

627 amino acids

Sequence
(BLAST)

001: MASIPSPHTA RLNSLLSSSS VNHNKPSNLS FLHASSNPSS IKLLHSVSPS ISSSSTTVIC NVLKTVESAD ISLSRDLHGV VSTSKPTILV SEKLGEAGLD
101: LLKSFGNVDC SYDLSPQDLC AKISLCDALI VRSGTKVTRD VFEAAQGRLK VVGRAGVGID NVDLQAATEF GCLVVNAPTA NTIAAAEHGI ALLTSMARNV
201: AQSDASMKAG KWLRSKYVGV SLVGKTLAIM GFGKVGSEVA RRAKGLGMHV IAHDPYAPAD RARAIGVDLV SFEQAISTAD FISLHMPLTP ATNKVFNDDT
301: FAKMKNGVRL INVARGGVID EDALVRALDS GIVAQAALDV FTVEPPPKDS KLVQHENVTV TPHLGASTKE AQEGVAIEIA EAVVGALNGE LSATAVNAPM
401: VPPEVLSELA PYVVLAEKVG RLAVQLVTGG SGIQSVKVVY KSARDPDSLD TRLLRAMVTK GIIEPISDTI INLVNADFSA KQKGLRISEE RIIVDSSPEY
501: PVESIQVQIS NVQSRFASAL SENGNISIEG RVKYGVPHLT RVGPFSVDVS LEGNLILCKQ VDQPGMIGKV GNILGESNVN VSFMSVGRTV KGKQAIMAIG
601: VDEEPDKDTQ KKIGEVSAVE EFVFLKL

Best Arabidopsis Sequence Match ( AT1G17745.1 )
(BLAST)

001: MAFSSSCSSV KAVNSRWTSP SPSPSSRFAV LPAFLHRRYA TSVKLTAISA ALKTVEQTTL TEDNRFSTVG SDSDEYNPTL PKPRILVTEK LGEAGVNLLR
101: EFGDVDCSYD LSPEDLKKKV AESDALIVRS GTKVTREVFE AAKGRLKVVG RAGVGIDNVD LQAATEHGCL VVNAPTANTV AAAEHGIALL ASMARNVAQA
201: DASIKAGKWE RSKYVGVSLV GKTLAVMGFG KVGTEVARRA KGLGMTVISH DPYAPADRAR ALGVDLVSFD QAISTADFVS LHMPLTPATK KVFNDETFSK
301: MKKGVRLINV ARGGVIDEDA LVRALDAGIV AQAALDVFCE EPPSKDSRLI QHENVTVTPH LGASTKEAQE GVAIEIAEAV AGALKGELSA TAVNAPMVAP
401: EVLSELTPYI VLAEKLGRLA VQLASGGKGV QSIRVVYRSA RDRDDLDTRL LRAMITKGII EPISDSYVNL VNADFIAKQK GLRISEERMV VDSSPEYPVD
501: SIQVQILNVE SNFAGAVSDA GDISIEGKVK YGVPHLTCVG SFGVDVSLEG NLILCRQVDQ PGMIGQVGNI LGEQNVNVNF MSVGRTVLRK QAIMAIGVDE
601: EPDNKTLERI GGVSAIEEFV FLKL

Arabidopsis Description

PGDHD-3-phosphoglycerate dehydrogenase [Source:TAIR;Acc:AT1G17745]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.