Factsheet for Solyc03g112070.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10
cytosol 1

Predictors

GFP

MS/MS

Papers

plastid: 22908117
plastid: 26371478
unclear: 26455813
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 26371478 doi

M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi

Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.

msms PMID: 26455813 doi

P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff

Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400046698	Potato	plastid	98.17	98.17
Solyc10g049890.1.1	Tomato	plastid	86.5	87.23
KRH35731	Soybean	nucleus	83.5	84.34
KRG91030	Soybean	endoplasmic reticulum	83.17	83.87
HORVU2Hr1G113180.3	Barley	cytosol	63.17	83.66
VIT_03s0180g00130.t01	Wine grape	cytosol	85.83	78.87
EES12983	Sorghum	plastid	79.67	77.1
Zm00001d026472_P001	Maize	plastid	78.5	76.96
Os04t0650800-01	Rice	plastid	77.83	76.18
Zm00001d002051_P001	Maize	plastid	79.33	76.04
GSMUA_Achr4P11440_001	Banana	plastid	72.0	75.92
TraesCS2A01G508900.1	Wheat	plastid	77.0	75.0
GSMUA_Achr4P04100_001	Banana	plastid	71.67	74.14
Solyc03g123830.2.1	Tomato	plastid	74.5	71.29
Solyc03g120670.2.1	Tomato	cytosol, nucleus, plastid	14.5	27.8
Solyc12g044250.1.1	Tomato	vacuole	14.33	27.3
Solyc11g020060.1.1	Tomato	cytosol	12.5	26.69
Solyc08g080030.2.1	Tomato	cytosol	12.0	26.67
Solyc01g111630.2.1	Tomato	nucleus, plastid	16.83	26.17
Solyc12g044260.1.1	Tomato	cytosol	13.33	25.56
Solyc03g120680.2.1	Tomato	nucleus	13.17	25.4
Solyc01g093990.2.1	Tomato	cytosol	13.67	25.39
Solyc03g120660.2.1	Tomato	cytosol	6.5	24.68
Solyc03g044670.1.1	Tomato	cytosol	9.5	23.75
Solyc02g086880.2.1	Tomato	plastid	14.67	23.1

Protein Annotations

KEGG:00260+1.1.1.95	KEGG:00270+3.3.1.1	KEGG:00680+1.1.1.95	Gene3D:3.30.1330.90	Gene3D:3.30.70.260	Gene3D:3.40.50.720
MapMan:4.1.4.1.1	InterPro:ACT_dom	InterPro:ASB_dom_sf	InterPro:Ado_hCys_hydrolase_NAD-bd	InterPro:D-isomer_2_OHA_DH_cat_dom	InterPro:D-isomer_DH_CS
InterPro:D-isomer_DH_CS1	InterPro:D-isomer_DH_NAD-bd	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004617
GO:GO:0005488	GO:GO:0006564	GO:GO:0008150	GO:GO:0008152	GO:GO:0008652	GO:GO:0009058
GO:GO:0009987	GO:GO:0016491	GO:GO:0016616	GO:GO:0051287	GO:GO:0055114	InterPro:IPR002912
InterPro:IPR029009	UniProt:K4BK61	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00389	PFAM:PF01842	PFAM:PF02826
InterPro:PGDH	ScanProsite:PS00065	ScanProsite:PS00670	ScanProsite:PS00671	PFscan:PS51671	PANTHER:PTHR42938
PANTHER:PTHR42938:SF14	SMART:SM00997	SUPFAM:SSF143548	SUPFAM:SSF51735	SUPFAM:SSF52283	SUPFAM:SSF55021
EnsemblPlantsGene:Solyc03g112070.2	EnsemblPlants:Solyc03g112070.2.1	TIGRFAMs:TIGR01327	UniParc:UPI00027692EE	SEG:seg	:

Description

D-3-phosphoglycerate dehydrogenase [Source:UniProtKB/TrEMBL;Acc:K4BK61]

Coordinates

chr3:-:62602873..62607283

Molecular Weight (calculated)

63312.9 Da

IEP (calculated)

7.534

GRAVY (calculated)

0.172

Length

600 amino acids

Sequence
(BLAST)

001: MAASPSSTMI LSSKSSRASL SWKNQLASTS AFRVSAVTLP RRSPRQCPRF VVFSMDAKPT VLVAEKLGEA GLKLLKEFAN VDCSYNLTPE ELCTKISLCD
101: ALVVRSGTKV TREIFESSGG RLKVVGRAGV GIDNVDLAAA TEHGCLVVNA PTANTVAAAE HGIALLTAMA RNVAQADASV KAGKWLRNKY VGVSLVGKTL
201: AVMGFGKVGS EVARRAKGLG MHVIAHDPYA PADRARAIGV QLVSFDEALA SADFISLHMP LTPATKQILN DETFAKMKKG VRIVNVARGG VIDEEALVRA
301: LDAGIVAQAA LDVFTVEPPP KDSKLIQHEN VTATPHLGAS TTEAQEGVAI EVAEAVVGAL KGELSATAVN APMVPAEVLL ELKPFVVLAE KLGRLAVQLV
401: AGGSGVKSVK VTYGSARAPD DLDTRLLRAM ITKGMIEPIS SVFINLVNAD FTAKQRGLQI SEERLILDGS PESPVEFIQV QIANVESKFA SAISDLGEIR
501: VEGRVKDGVP HLTKVGSFEV DVSLEGSIIL CSQVDQPGMI GKVGSVLGEE NVNVSFMSVG RVAPRKQAVM AIGVDEQPSK ESLKRIGEIP AIQEFVYLGL

Best Arabidopsis Sequence Match ( AT4G34200.1 )
(BLAST)

001: MSATAAASSS IAVATNSLRN VTLSSRSPLP SAISVAFPSR GRNTLQRRLV LVSCSTGDGS KPTILVAEKL GDAGIKLLED VANVDCSYNM TPEELNIKIS
101: LCDALIVRSG TKVGREVFES SHGRLKVVGR AGVGIDNVDL SAATEFGCLV VNAPTANTIA AAEHGIALMA AMARNVAQAD ASVKAGEWKR NKYVGVSLVG
201: KTLAVLGFGK VGTEVARRAK GLGMRVIAHD PYAPADRAHA IGVDLVSFDE ALATADFISL HMPLTPTTSK ILNDETFAKM KKGVRIVNVA RGGVIDEDAL
301: VRALDAGIVA QAALDVFTKE PPAKDSKLVQ HERVTVTPHL GASTMEAQEG VAIEIAEAVV GALNGELAAT AVNAPMVSAE VLTELKPYVV LAEKLGRLAV
401: QLVAGGSGVK NAKITYASAR ATDDLDTRLL RAMITKGIIE PISDVYVNLV NADFTAKQRG LRLSEERVLL DGSPESPLET ITVQLSNVES KFASSLSESG
501: EVKVEGKVKD GVPHLTKVGS FEVDVTLEGS IILCRQVDQP GMIGTVGSIL GESNVNVNFM SVGRIAPRKQ AIMAIGVDDI PSKETLKKIG EIPAVEEFVF
601: LKL

Arabidopsis Description

PGDH1D-3-phosphoglycerate dehydrogenase [Source:UniProtKB/TrEMBL;Acc:A0A178UWV4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.