Factsheet for TraesCS2A01G508900.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
cytosol 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid, secretory
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
Predotar:	plastid
PProwler:	secretory
TargetP:	plastid

plastid: 16481623
plastid: 16595579
plastid: 18419817
golgi: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

msms PMID: 18419817 doi

FM Dupont

Western Regional Research Center, United States Department of Agriculture, Agricultural Research Service, 800 Buchanan Street, Albany, CA 94710K, USA.

msms PMID: 16595579 doi

Y Balmer, WH Vensel, FM DuPont, BB Buchanan, WJ Hurkman

Department of Plant and Microbial Biology, University of California, 111 Koshland Hall, Berkeley, CA 94720, USA.

msms PMID: 16481623 doi

Y Balmer, WH Vensel, N Cai, W Manieri, P Schürmann, WJ Hurkman, BB Buchanan

Department of Plant and Biology, University of California, 111 Koshland Hall, Berkeley, CA 94720, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU2Hr1G113180.3	Barley	cytosol	72.73	98.9
EES12983	Sorghum	plastid	87.01	86.45
Zm00001d026472_P001	Maize	plastid	85.06	85.62
Os04t0650800-01	Rice	plastid	84.42	84.83
Zm00001d002051_P001	Maize	plastid	86.04	84.66
CDY57737	Canola	cytosol	22.4	80.7
GSMUA_Achr4P11440_001	Banana	plastid	72.56	78.56
KRG91030	Soybean	endoplasmic reticulum	75.49	78.15
KRH35731	Soybean	nucleus	75.16	77.95
PGSC0003DMT400059818	Potato	plastid	75.16	77.82
Solyc10g049890.1.1	Tomato	plastid	74.68	77.31
Solyc03g112070.2.1	Tomato	plastid	75.0	77.0
PGSC0003DMT400046698	Potato	plastid	74.84	76.83
CDX75409	Canola	plastid	73.86	76.34
CDX76268	Canola	plastid	74.19	76.17
CDY49286	Canola	plastid	73.7	75.92
CDX72462	Canola	plastid	73.7	75.92
Bra017637.1-P	Field mustard	plastid	73.7	75.92
Bra034616.1-P	Field mustard	plastid	74.03	75.87
VIT_18s0001g09890.t01	Wine grape	plastid	74.51	75.87
GSMUA_Achr4P04100_001	Banana	plastid	71.27	75.69
CDY22972	Canola	plastid	71.92	75.47
CDX82295	Canola	plastid	71.75	75.3
AT4G34200.1	Thale cress	plastid	73.7	75.29
Bra001747.1-P	Field mustard	plastid	71.43	74.96
AT3G19480.1	Thale cress	plastid	71.1	74.49
VIT_03s0180g00130.t01	Wine grape	cytosol	77.44	73.05
Bra011506.1-P	Field mustard	plastid	73.54	72.95
CDY57736	Canola	plastid	44.97	72.7
CDX69034	Canola	plastid	74.19	72.31
TraesCS3A01G146800.1	Wheat	plastid	70.78	70.32
TraesCS7A01G496500.1	Wheat	plastid	69.64	70.1
TraesCS1A01G221000.1	Wheat	plastid	65.26	68.95
TraesCS2A01G034900.1	Wheat	mitochondrion	16.56	31.48
TraesCS2A01G034800.1	Wheat	cytosol, plasma membrane, plastid	15.26	29.75
TraesCS7A01G538500.1	Wheat	cytosol	15.75	28.2
TraesCS3A01G153500.1	Wheat	peroxisome	14.29	27.67
TraesCS2A01G035000.2	Wheat	mitochondrion, plastid	16.23	27.62
TraesCS2A01G028600.1	Wheat	extracellular, plasma membrane	14.77	27.16
TraesCS2A01G035400.1	Wheat	mitochondrion	14.45	26.97
TraesCS2A01G035500.1	Wheat	extracellular, mitochondrion	14.45	26.65
TraesCS6A01G000400.1	Wheat	peroxisome	16.56	26.42
TraesCS5A01G496700.1	Wheat	cytosol, peroxisome, plastid	13.47	26.27
TraesCS5A01G161300.1	Wheat	plastid	14.61	23.81
TraesCS7A01G232200.1	Wheat	golgi	13.15	21.49
TraesCS6A01G274900.1	Wheat	mitochondrion	10.88	17.77

Protein Annotations

KEGG:00260+1.1.1.95	KEGG:00680+1.1.1.95	Gene3D:3.30.1330.90	Gene3D:3.30.70.260	Gene3D:3.40.50.720	MapMan:4.1.4.1.1
InterPro:ACT_dom	InterPro:ASB_dom_sf	InterPro:D-isomer_2_OHA_DH_cat_dom	InterPro:D-isomer_DH_CS	InterPro:D-isomer_DH_CS1	InterPro:D-isomer_DH_NAD-bd
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004617	GO:GO:0005488	GO:GO:0006564
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016616	GO:GO:0051287
GO:GO:0055114	InterPro:IPR002912	InterPro:IPR029009	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00389	PFAM:PF01842
PFAM:PF02826	InterPro:PGDH	ScanProsite:PS00065	ScanProsite:PS00671	PFscan:PS51671	PANTHER:PTHR42938
PANTHER:PTHR42938:SF14	SUPFAM:SSF143548	SUPFAM:SSF51735	SUPFAM:SSF52283	SUPFAM:SSF55021	TIGRFAMs:TIGR01327
EnsemblPlantsGene:TraesCS2A01G508900	EnsemblPlants:TraesCS2A01G508900.1	TIGR:cd04902	TIGR:cd12173	SEG:seg	:

Description

No Description!

Coordinates

chr2A:-:735007114..735009965

Molecular Weight (calculated)

60452.6 Da

IEP (calculated)

6.211

GRAVY (calculated)

0.240

Length

616 amino acids

Sequence
(BLAST)

001: MAAPSPTTAA ATHHRALLPA PARRAAXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XSPPATAAVA VEGKPTVLVA EKLGAAGLAL LREFANVDCS
101: YGLSPEELRA KISLCDALIV RSGTKVGRDV FEASGGRLRV VGRAGVGIDN VDLAAATEHG CLVVNAPTAN TVAAAEHGIA LLCAMARNVA QADASLKAGK
201: WARTKYVGVS LVGKTLAILG FGKVGSEVAR RAKGLGMHVI AHDPYASADR ARAIGVDLVS MEEAMTTADF ISLHMPLTPS TNKMLNDEAF VKMKKGVRII
301: NVARGGVIDE DALVRALDAG IVAQAALDVF TKEPPAADSK LVLHENVTVT PHLGASTVEA QEGVAIEIAE AVTGALKGEL AASAVNAPMV PAEVLSELAP
401: YVMLAEKLGR LAVQLVAGGG GIKSVKVTYA SARAPDDLDT RLLRAMITKG VIEPISDVFV NLVNADFTAK QRGIRVSEEK IVMDGSPETP LEYIQVQIAN
501: VESKFPSAIC DSGLVTVEGR VKDGIPHLTK VGAFEVDVSM EGSLILCRQV DQPGMIGSVG SVLGEENVNV SFMSVGRIAP RKTAIMAIGV DEEPSKATLT
601: KIGEIPAIEE FVFLKL

Best Arabidopsis Sequence Match ( AT4G34200.1 )
(BLAST)

001: MSATAAASSS IAVATNSLRN VTLSSRSPLP SAISVAFPSR GRNTLQRRLV LVSCSTGDGS KPTILVAEKL GDAGIKLLED VANVDCSYNM TPEELNIKIS
101: LCDALIVRSG TKVGREVFES SHGRLKVVGR AGVGIDNVDL SAATEFGCLV VNAPTANTIA AAEHGIALMA AMARNVAQAD ASVKAGEWKR NKYVGVSLVG
201: KTLAVLGFGK VGTEVARRAK GLGMRVIAHD PYAPADRAHA IGVDLVSFDE ALATADFISL HMPLTPTTSK ILNDETFAKM KKGVRIVNVA RGGVIDEDAL
301: VRALDAGIVA QAALDVFTKE PPAKDSKLVQ HERVTVTPHL GASTMEAQEG VAIEIAEAVV GALNGELAAT AVNAPMVSAE VLTELKPYVV LAEKLGRLAV
401: QLVAGGSGVK NAKITYASAR ATDDLDTRLL RAMITKGIIE PISDVYVNLV NADFTAKQRG LRLSEERVLL DGSPESPLET ITVQLSNVES KFASSLSESG
501: EVKVEGKVKD GVPHLTKVGS FEVDVTLEGS IILCRQVDQP GMIGTVGSIL GESNVNVNFM SVGRIAPRKQ AIMAIGVDDI PSKETLKKIG EIPAVEEFVF
601: LKL

Arabidopsis Description

PGDH1D-3-phosphoglycerate dehydrogenase [Source:UniProtKB/TrEMBL;Acc:A0A178UWV4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.